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铜死亡相关特征可预测原发性弥漫性神经胶质瘤的预后和免疫微环境:一项综合分析。

The cuproptosis-related signature predicts the prognosis and immune microenvironments of primary diffuse gliomas: a comprehensive analysis.

机构信息

Department of Neurosurgery, West China Hospital, Sichuan University, No. 37 Guo Xue Xiang, Chengdu, 610041, China.

National Clinical Research Center for Geriatrics, West China Hospital, Sichuan University, Chengdu, 610041, China.

出版信息

Hum Genomics. 2024 Jul 2;18(1):74. doi: 10.1186/s40246-024-00636-2.

Abstract

BACKGROUND

Evidence has revealed a connection between cuproptosis and the inhibition of tumor angiogenesis. While the efficacy of a model based on cuproptosis-related genes (CRGs) in predicting the prognosis of peripheral organ tumors has been demonstrated, the impact of CRGs on the prognosis and the immunological landscape of gliomas remains unexplored.

METHODS

We screened CRGs to construct a novel scoring tool and developed a prognostic model for gliomas within the various cohorts. Afterward, a comprehensive exploration of the relationship between the CRG risk signature and the immunological landscape of gliomas was undertaken from multiple perspectives.

RESULTS

Five genes (NLRP3, ATP7B, SLC31A1, FDX1, and GCSH) were identified to build a CRG scoring system. The nomogram, based on CRG risk and other signatures, demonstrated a superior predictive performance (AUC of 0.89, 0.92, and 0.93 at 1, 2, and 3 years, respectively) in the training cohort. Furthermore, the CRG score was closely associated with various aspects of the immune landscape in gliomas, including immune cell infiltration, tumor mutations, tumor immune dysfunction and exclusion, immune checkpoints, cytotoxic T lymphocyte and immune exhaustion-related markers, as well as cancer signaling pathway biomarkers and cytokines.

CONCLUSION

The CRG risk signature may serve as a robust biomarker for predicting the prognosis and the potential viability of immunotherapy responses. Moreover, the key candidate CRGs might be promising targets to explore the underlying biological background and novel therapeutic interventions in gliomas.

摘要

背景

已有证据表明铜死亡与肿瘤血管生成抑制之间存在关联。虽然基于铜死亡相关基因(CRGs)的模型在预测周围器官肿瘤预后方面的疗效已得到证实,但 CRGs 对胶质瘤预后和免疫景观的影响仍有待探索。

方法

我们筛选 CRGs 来构建一个新的评分工具,并在不同队列中为胶质瘤开发一个预后模型。之后,从多个角度全面探讨了 CRG 风险特征与胶质瘤免疫景观之间的关系。

结果

确定了五个基因(NLRP3、ATP7B、SLC31A1、FDX1 和 GCSH)来构建 CRG 评分系统。基于 CRG 风险和其他特征的列线图在训练队列中表现出了更好的预测性能(AUC 在 1、2 和 3 年时分别为 0.89、0.92 和 0.93)。此外,CRG 评分与胶质瘤免疫景观的各个方面密切相关,包括免疫细胞浸润、肿瘤突变、肿瘤免疫功能障碍和排除、免疫检查点、细胞毒性 T 淋巴细胞和免疫耗竭相关标志物以及癌症信号通路生物标志物和细胞因子。

结论

CRG 风险特征可能是预测预后和免疫治疗反应潜力的强大生物标志物。此外,关键候选 CRGs 可能是探索胶质瘤潜在生物学背景和新治疗干预的有前途的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42b2/11220998/fa4f6a9cb83f/40246_2024_636_Fig1_HTML.jpg

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