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基于单层石墨烯的虹彩病毒检测用生物纳米传感器

Bionanosensor utilizing single-layer graphene for the detection of iridovirus.

机构信息

Mechanical Engineering Department, A D Patel Institute of Technology, CVM University, New Vallabh Vidyanagar, Gujarat, India.

Mechatronics Engineering Department, G.H. Patel College of Engineering & Technology, CVM University, Vallabh Vidyanagar, Gujarat, India.

出版信息

J Mol Model. 2024 Jul 8;30(8):256. doi: 10.1007/s00894-024-06035-7.

Abstract

CONTEXT

Iridoviruses, a group of double-stranded DNA viruses, pose a significant threat to various aquatic animals, causing substantial economic losses in aquaculture and impacting ecosystem health. Early and accurate detection of these viruses is crucial for effective disease management and control. Conventional diagnostic methods, including polymerase chain reaction (PCR) and virus isolation, often require specialized laboratories, skilled personnel, and considerable time. This highlights the need for rapid, sensitive, and cost-effective diagnostic tools for iridovirus detection. Single-layer graphene, a two-dimensional material with unique properties like high surface area, excellent electrical conductivity, and chemical stability, has emerged as a versatile platform for biosensing applications. This paper explores the potential of employing single-layer graphene in the development of a bionanosensor for the sensitive and rapid detection of iridoviruses. The aim of the present investigation is to develop a sensor by analyzing the vibrational responses of single-layer graphene sheets (SLGS) with attached microorganisms. Graphene-based virus sensors typically rely on the interaction between the virus and the graphene surface, which lead to changes in the frequency response of graphene. This change is measured and used to detect the presence of the virus. Its high surface-to-volume ratio and sensitivity to changes in its frequency make it a highly sensitive platform for virus detection.

METHODS

We employ finite element method (FEM) analysis to model the sensor's performance and optimize its design parameters. The simulation results highlight the sensor's potential for achieving high sensitivity and rapid detection of iridovirus. Bridged and simply supported with roller support boundary conditions applied at the ends of SLG structure. Simulations have been performed to see how SLG behaves when used as sensors. A single-layer graphene armchair SLG (5,5) with 50-nm length exhibits its highest frequency vibration at 8.66 × 10 Hz, with a mass of 1.2786 Zg. In contrast, a zigzag-SLG with a (18,0) configuration has its lowest frequency vibration at 2.82 × 10 Hz. This aids in comprehending the thresholds of detection and the influence of factors such as size, and boundary conditions on sensor effectiveness. These biosensors can be especially helpful in biological sciences and the medical field since they can considerably improve the treatment of patients, cancer early diagnosis, and pathogen identification when used in clinical environments.

摘要

背景

虹彩病毒是一类双链 DNA 病毒,对各种水生动物构成重大威胁,给水产养殖业造成重大经济损失,并影响生态系统健康。早期、准确地检测这些病毒对于有效疾病管理和控制至关重要。传统的诊断方法,包括聚合酶链反应(PCR)和病毒分离,通常需要专门的实验室、熟练的人员和相当长的时间。这突出表明需要用于虹彩病毒检测的快速、敏感和具有成本效益的诊断工具。单层石墨烯是一种具有独特性质的二维材料,例如高表面积、优异的导电性和化学稳定性,已成为生物传感应用的多功能平台。本文探讨了利用单层石墨烯开发用于敏感和快速检测虹彩病毒的生物纳米传感器的潜力。本研究的目的是通过分析附着微生物的单层石墨烯片(SLGS)的振动响应来开发传感器。基于石墨烯的病毒传感器通常依赖于病毒与石墨烯表面的相互作用,这导致石墨烯的频率响应发生变化。这种变化被测量并用于检测病毒的存在。其高的比表面积和对其频率变化的敏感性使其成为病毒检测的高度敏感平台。

方法

我们采用有限元方法(FEM)分析来模拟传感器的性能并优化其设计参数。模拟结果突出了传感器实现虹彩病毒高灵敏度和快速检测的潜力。采用边界条件为简支和带有滚子支撑的边界条件,施加在 SLG 结构的两端。对传感器的性能进行了模拟,以了解其作为传感器的行为。具有 50nm 长度的单层层状石墨烯扶手椅 SLG(5,5)在 8.66×10 Hz 时表现出其最高频率振动,质量为 1.2786 Zg。相比之下,具有(18,0)构型的锯齿形 SLG 在 2.82×10 Hz 时具有最低频率振动。这有助于理解检测阈值以及大小和边界条件等因素对传感器有效性的影响。这些生物传感器在生物科学和医学领域特别有用,因为它们可以在临床环境中极大地改善患者的治疗、癌症的早期诊断和病原体的识别。

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