National Technology Innovation Center of Synthetic Biology, Tianjin 300308, China.
Key Laboratory of Systems Microbial Biotechnology, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Nucleic Acids Res. 2024 Aug 12;52(14):8344-8355. doi: 10.1093/nar/gkae628.
Horizontal gene transfer has occurred across all domains of life and contributed substantially to the evolution of both prokaryotes and eukaryotes. Previous studies suggest that many horizontally transferred eukaryotic genes conferred selective advantages to bacterial recipients, but how these eukaryotic genes evolved into functional bacterial genes remained unclear, particularly how bacteria overcome the expressional barrier posed by eukaryotic introns. Here, we first confirmed that the presence of intron would inactivate the horizontally transferred gene in Escherichia coli even if this gene could be efficiently transcribed. Subsequent large-scale genetic screens for activation of gene function revealed that activation events could rapidly occur within several days of selective cultivation. Molecular analysis of activation events uncovered two distinct mechanisms how bacteria overcome the intron barrier: (i) intron was partially deleted and the resulting stop codon-removed mutation led to one intact foreign protein or (ii) intron was intactly retained but it mediated the translation initiation and the interaction of two split small proteins (derived from coding sequences up- and downstream of intron, respectively) to restore gene function. Our findings underscore the likelihood that horizontally transferred eukaryotic intron-containing genes could rapidly acquire functionality if they confer a selective advantage to the prokaryotic recipient.
水平基因转移发生在所有生命领域,并为原核生物和真核生物的进化做出了重大贡献。先前的研究表明,许多水平转移的真核基因赋予了细菌受体选择优势,但这些真核基因如何进化成功能性的细菌基因仍不清楚,特别是细菌如何克服真核内含子带来的表达障碍。在这里,我们首先证实,即使该基因可以被有效地转录,内含子的存在也会使水平转移的基因失活。随后进行了大规模的遗传筛选,以激活基因功能,结果表明激活事件可以在选择性培养的几天内迅速发生。对激活事件的分子分析揭示了细菌克服内含子障碍的两种不同机制:(i)内含子部分缺失,导致产生一个完整的外源蛋白,从而消除了终止密码子;(ii)内含子完整保留,但它介导了翻译起始和两个分裂的小蛋白(分别来自内含子上下游的编码序列)的相互作用,从而恢复了基因功能。我们的发现强调了这样一种可能性,即如果水平转移的含有内含子的真核基因赋予了原核受体选择优势,那么它们可能会迅速获得功能。