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基于分治法的CT图像花瓣分割

Petal segmentation in CT images based on divide-and-conquer strategy.

作者信息

Naka Yuki, Utsumi Yuzuko, Iwamura Masakazu, Tsukaya Hirokazu, Kise Koichi

机构信息

Graduate School of Informatics, Osaka Metropolitan University, Sakai, Japan.

Graduate School of Science, The University of Tokyo, Tokyo, Japan.

出版信息

Front Plant Sci. 2024 Jul 15;15:1389902. doi: 10.3389/fpls.2024.1389902. eCollection 2024.

Abstract

Manual segmentation of the petals of flower computed tomography (CT) images is time-consuming and labor-intensive because the flower has many petals. In this study, we aim to obtain a three-dimensional (3D) structure of flowers and propose a petal segmentation method using computer vision techniques. Petal segmentation on the slice images fails by simply applying the segmentation methods because the shape of the petals in CT images differs from that of the objects targeted by the latest instance segmentation methods. To overcome these challenges, we crop two-dimensional (2D) long rectangles from each slice image and apply the segmentation method to segment the petals on the images. Thanks to cropping, it is easier to segment the shape of the petals in the cropped images using the segmentation methods. We can also use the latest segmentation method for the task because the number of images used for training is augmented by cropping. Subsequently, the results are integrated into 3D to obtain 3D segmentation volume data. The experimental results show that the proposed method can segment petals on slice images with higher accuracy than the method without cropping. The 3D segmentation results were also obtained and visualized successfully.

摘要

对花卉计算机断层扫描(CT)图像中的花瓣进行手动分割既耗时又费力,因为花朵有许多花瓣。在本研究中,我们旨在获取花朵的三维(3D)结构,并提出一种使用计算机视觉技术的花瓣分割方法。由于CT图像中花瓣的形状与最新实例分割方法所针对的对象形状不同,因此简单地应用分割方法对切片图像进行花瓣分割会失败。为了克服这些挑战,我们从每个切片图像中裁剪出二维(2D)长矩形,并应用分割方法对图像上的花瓣进行分割。由于裁剪,使用分割方法更容易分割裁剪后图像中花瓣的形状。我们还可以将最新的分割方法用于该任务,因为通过裁剪增加了用于训练的图像数量。随后,将结果整合到3D中以获得3D分割体积数据。实验结果表明,所提出的方法能够比不进行裁剪的方法更准确地分割切片图像上的花瓣。还成功获得并可视化了3D分割结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1979/11284574/59701440f721/fpls-15-1389902-g001.jpg

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