肌动蛋白网络调节 TNFα 刺激下异质 NF-κB 的动态变化。

Actin networks modulate heterogeneous NF-κB dynamics in response to TNFα.

机构信息

Chester Beatty Laboratories, Division of Cancer Biology, Institute of Cancer Research, London, United Kingdom.

Department of Life Sciences, University of Bath, Bath, United Kingdom.

出版信息

Elife. 2024 Aug 7;13:e86042. doi: 10.7554/eLife.86042.

Abstract

The canonical NF-κB transcription factor RELA is a master regulator of immune and stress responses and is upregulated in pancreatic ductal adenocardinoma (PDAC) tumours. In this study, we characterised previously unexplored endogenous RELA-GFP dynamics in PDAC cell lines through live single-cell imaging. Our observations revealed that TNFα stimulation induces rapid, sustained, and non-oscillatory nuclear translocation of RELA. Through Bayesian analysis of single-cell datasets with variation in nuclear RELA, we predicted that RELA heterogeneity in PDAC cell lines is dependent on F-actin dynamics. RNA-seq analysis identified distinct clusters of RELA-regulated gene expression in PDAC cells, including TNFα-induced RELA upregulation of the actin regulators NUAK2 and ARHGAP31. Further, siRNA-mediated depletion of ARHGAP31 and NUAK2 altered TNFα-stimulated nuclear RELA dynamics in PDAC cells, establishing a novel negative feedback loop that regulates RELA activation by TNFα. Additionally, we characterised the NF-κB pathway in PDAC cells, identifying how NF-κB/IκB proteins genetically and physically interact with RELA in the absence or presence of TNFα. Taken together, we provide computational and experimental support for interdependence between the F-actin network and the NF-κB pathway with RELA translocation dynamics in PDAC.

摘要

经典的 NF-κB 转录因子 RELA 是免疫和应激反应的主要调节因子,在胰腺导管腺癌 (PDAC) 肿瘤中上调。在这项研究中,我们通过活细胞单细胞成像来描述 PDAC 细胞系中以前未探索的内源性 RELA-GFP 动力学。我们的观察结果表明,TNFα 刺激诱导 RELA 的快速、持续和非振荡性核转位。通过对核 RELA 变化的单细胞数据集进行贝叶斯分析,我们预测 PDAC 细胞系中 RELA 的异质性依赖于 F-肌动蛋白动力学。RNA-seq 分析鉴定了 PDAC 细胞中 RELA 调节的基因表达的不同簇,包括 TNFα 诱导的肌动蛋白调节剂 NUAK2 和 ARHGAP31 的 RELA 上调。此外,siRNA 介导的 ARHGAP31 和 NUAK2 耗竭改变了 PDAC 细胞中 TNFα 刺激的核 RELA 动力学,建立了一个新的负反馈回路,调节 TNFα 对 RELA 的激活。此外,我们还对 PDAC 细胞中的 NF-κB 通路进行了表征,确定了在缺乏或存在 TNFα 的情况下,NF-κB/IκB 蛋白如何与 RELA 在遗传和物理上相互作用。总之,我们为 PDAC 中 F-肌动蛋白网络和 NF-κB 通路与 RELA 易位动力学之间的相互依存关系提供了计算和实验支持。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9c53/11524587/c7c98cb28710/elife-86042-fig1.jpg

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