Cao Lei, Yang Wenzhi, Duan Xiaozong, Shao Yipu, Zhang Zhizhong, Wang Chenchao, Sun Kaiwen, Zhang Manxia, Li Hongwei, Harada Kouji H, Yang Bo
Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, China.
School of Life Science, Zhengzhou University, Zhengzhou, 450000, China.
Heliyon. 2024 Jul 18;10(14):e34600. doi: 10.1016/j.heliyon.2024.e34600. eCollection 2024 Jul 30.
The aim of this study was to elucidate the genetic pathways associated with Moyamoya disease (MMD) and Moyamoya syndrome (MMS), compare the functional activities, and validate relevant related genes in an independent dataset.
We conducted a comprehensive search for genetic studies on MMD and MMS across multiple databases and identified related genes. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichments analyses were performed for these genes. Commonly shared genes were selected for further validation in the independent dataset, GSE189993. The Sangerbox platform was used to perform statistical analysis and visualize the results. <0.05 indicated a statistically significant result.
We included 52 MMD and 51 MMS-related publications and identified 126 and 51 relevant genes, respectively. GO analysis for MMD showed significant enrichment in cytokine activity, cell membrane receptors, enzyme binding, and immune activity. A broader range of terms was enriched for MMS. KEGG pathway analysis for MMD highlighted immune and cellular activities and pathways related to MMS prominently featured inflammation and metabolic disorders. Notably, nine overlapping genes were identified and validated. The expressions of RNF213, PTPN11, and MTHFR demonstrated significant differences in GSE189993. A combined receiver operating characteristic curve showed high diagnostic accuracy (AUC = 0.918).
The findings indicate a close relationship of MMD with immune activity and MMS with inflammation, metabolic processes and other environmental factors in a given genetic background. Differentiating between MMD and MMS can enhance the understanding of their pathophysiology and inform the strategies for their diagnoses and treatment.
本研究旨在阐明与烟雾病(MMD)和烟雾综合征(MMS)相关的遗传途径,比较其功能活性,并在独立数据集中验证相关基因。
我们在多个数据库中全面搜索了关于MMD和MMS的遗传研究,并鉴定出相关基因。对这些基因进行了基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析。选择共同的基因在独立数据集GSE189993中进行进一步验证。使用Sangerbox平台进行统计分析并可视化结果。P<0.05表示具有统计学意义。
我们纳入了52篇与MMD相关和51篇与MMS相关的出版物,分别鉴定出126个和51个相关基因。MMD的GO分析显示在细胞因子活性、细胞膜受体、酶结合和免疫活性方面有显著富集。MMS富集的术语范围更广。MMD的KEGG通路分析突出了免疫和细胞活性,而与MMS相关的通路则主要表现为炎症和代谢紊乱。值得注意的是,鉴定并验证了9个重叠基因。RNF213、PTPN11和MTHFR的表达在GSE189993中显示出显著差异。联合受试者工作特征曲线显示出较高的诊断准确性(AUC = 0.918)。
研究结果表明,在特定的遗传背景下,MMD与免疫活性密切相关,MMS与炎症、代谢过程及其他环境因素密切相关。区分MMD和MMS有助于加深对其病理生理学的理解,并为其诊断和治疗策略提供依据。