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克里米亚无花果树上类荫病毒的首次报道及分子特征分析

First Report and Molecular Characterization of Umbra-like Virus on Caprifig Trees in Crimea.

作者信息

Motsar Elena, Sheveleva Anna, Sharko Fedor, Mitrofanova Irina, Chirkov Sergei

机构信息

Department of Virology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.

National Research Center "Kurchatov Institute", 123182 Moscow, Russia.

出版信息

Plants (Basel). 2024 Aug 14;13(16):2262. doi: 10.3390/plants13162262.

Abstract

Fig mosaic is the most serious viral disease affecting figs. A fig germplasm collection from the Nikita Botanical Garden on the Crimean Peninsula was surveyed for viruses using high-throughput sequencing and RT-PCR with primers specific to known fig viruses. Reads related to fig umbra-like virus (FULV) were generated in samples from caprifig (pollinator) trees of the cultivar Belle dure. trees of other cultivars, as well as , , and trees, tested negative for FULV. Near-complete genomes of five Crimean fig umbra-like virus (FULV-CR) isolates shared 99.4% to 99.9% identity and were most closely related (85.2% identity) to the Hawaiian FULV isolate Oahu1 (MW480892). Based on their genome structure and a phylogenetic analysis, the FULV-CR isolates were determined to be dicot-infecting Class 2 umbra-like viruses and seem to be highly divergent forms of the same virus found recently in Hawaii, USA. This is the first report of an umbra-like virus found on figs in Crimea and outside of Hawaii, expanding information on the geographical distribution and genetic diversity of FULV. All of the Crimean FULV-positive plants were also co-infected with fig mosaic virus, fig badnavirus 1, and grapevine badna FI virus.

摘要

无花果花叶病是影响无花果最严重的病毒性疾病。利用高通量测序和针对已知无花果病毒的特异性引物进行逆转录聚合酶链反应(RT-PCR),对来自克里米亚半岛尼基塔植物园的无花果种质资源库进行了病毒检测。在品种“Belle dure”的野生无花果(传粉者)树样本中检测到与无花果阴隐样病毒(FULV)相关的读数。其他品种的树以及[此处原文缺失相关树的品种信息]树对FULV检测呈阴性。五个克里米亚无花果阴隐样病毒(FULV-CR)分离株的近完整基因组具有99.4%至99.9%的同一性,并且与夏威夷FULV分离株瓦胡岛1(MW480892)关系最为密切(同一性为85.2%)。基于它们的基因组结构和系统发育分析,FULV-CR分离株被确定为感染双子叶植物的2类阴隐样病毒,似乎是最近在美国夏威夷发现的同一病毒的高度分化形式。这是在克里米亚和夏威夷以外的无花果上发现阴隐样病毒的首次报告,拓展了关于FULV地理分布和遗传多样性的信息。所有克里米亚FULV阳性植物还同时感染了无花果花叶病毒、无花果杆状病毒1和葡萄藤杆状FI病毒。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7671/11359341/04fe7ff67028/plants-13-02262-g001.jpg

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