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转录激活结构域与酵母染色质重塑复合物 SWI/SNF、RSC 和 INO80 的 ATP 酶亚基相互作用。

Transcriptional activation domains interact with ATPase subunits of yeast chromatin remodelling complexes SWI/SNF, RSC and INO80.

机构信息

Center for Functional Genomics of Microbes, Institut Für Genetik Und Funktionelle Genomforschung, Universität Greifswald, Felix-Hausdorff-Strasse 8, 17487, Greifswald, Germany.

Cheplapharm, Greifswald, Germany.

出版信息

Curr Genet. 2024 Sep 5;70(1):15. doi: 10.1007/s00294-024-01300-x.

Abstract

Chromatin remodelling complexes (CRC) are ATP-dependent molecular machines important for the dynamic organization of nucleosomes along eukaryotic DNA. CRCs SWI/SNF, RSC and INO80 can move positioned nucleosomes in promoter DNA, leading to nucleosome-depleted regions which facilitate access of general transcription factors. This function is strongly supported by transcriptional activators being able to interact with subunits of various CRCs. In this work we show that SWI/SNF subunits Swi1, Swi2, Snf5 and Snf6 can bind to activation domains of Ino2 required for expression of phospholipid biosynthetic genes in yeast. We identify an activator binding domain (ABD) of ATPase Swi2 and show that this ABD is functionally dispensable, presumably because ABDs of other SWI/SNF subunits can compensate for the loss. In contrast, mutational characterization of the ABD of the Swi2-related ATPase Sth1 revealed that some conserved basic and hydrophobic amino acids within this domain are essential for the function of Sth1. While ABDs of Swi2 and Sth1 define separate functional protein domains, mapping of an ABD within ATPase Ino80 showed co-localization with its HSA domain also required for binding actin-related proteins. Comparative interaction studies finally demonstrated that several unrelated activators each exhibit a specific binding pattern with ABDs of Swi2, Sth1 and Ino80.

摘要

染色质重塑复合物(CRC)是一种依赖于 ATP 的分子机器,对于真核生物 DNA 中核小体的动态组织至关重要。CRC 的 SWI/SNF、RSC 和 INO80 可以在启动子 DNA 中移动定位的核小体,导致核小体缺失区域,从而有利于一般转录因子的进入。转录激活因子能够与各种 CRC 的亚基相互作用,强烈支持了这一功能。在这项工作中,我们表明 SWI/SNF 亚基 Swi1、Swi2、Snf5 和 Snf6 可以与酵母中磷脂生物合成基因表达所需的 Ino2 的激活结构域结合。我们确定了 ATP 酶 Swi2 的激活结构域(ABD),并表明该 ABD 在功能上是可有可无的,大概是因为其他 SWI/SNF 亚基的 ABD 可以弥补其缺失。相比之下,对与 Swi2 相关的 ATP 酶 Sth1 的 ABD 的突变特征分析表明,该结构域内的一些保守碱性和疏水性氨基酸对于 Sth1 的功能是必需的。虽然 Swi2 和 Sth1 的 ABD 定义了独立的功能蛋白结构域,但 ATP 酶 Ino80 的 ABD 映射显示其 HSA 结构域也与结合肌动蛋白相关蛋白的功能有关。比较相互作用研究最终表明,几个不相关的激活因子各自表现出与 Swi2、Sth1 和 Ino80 的 ABD 特异性结合模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bbbb/11377671/6f3421c6d4f1/294_2024_1300_Fig1_HTML.jpg

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