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一种与癌症相关的成纤维细胞相关风险评分(CAFscore)有助于指导胶质母细胞瘤的预后和个体化治疗。

A cancer-associated fibroblasts related risk score (CAFscore) helps to guide prognosis and personal treatment for Glioblastoma.

作者信息

Wu Lili, Liu Qinjian, Li Guoyin, Shi Weidong, Peng Weifeng

机构信息

Department of Encephalopathy, Zhoukou Hospital of Traditional Chinese Medicine, Zhoukou, 466099, China.

Medical Affairs Section, Zhoukou Hospital of Traditional Chinese Medicine, Zhoukou, 466099, China.

出版信息

Discov Oncol. 2024 Sep 10;15(1):420. doi: 10.1007/s12672-024-01314-4.

Abstract

BACKGROUND

Recent studies have identified the presence of cancer-associated fibroblasts (CAFs) within glioblastoma (GBM), yet their biological roles and underlying mechanisms remain poorly understood. This study aimed to construct a CAF-related prognostic model to guide patient prognosis and treatment strategies.

METHOD

We employed various bioinformatics methods, including enrichment analysis, Weighted Gene Co-expression Network Analysis (WGCNA), Lasso regression analysis, and machine learning techniques such as XGBoost and Random Forest, to develop a novel risk index termed CAFscore. Patients were stratified into high and low CAFscore groups for subsequent survival analysis. The area under the curve (AUC) and concordance index (C-index) for CAFscore were calculated and compared against other clinical characteristics and existing prognostic models. Drug sensitivity assessments were conducted using the Oncopredict package. Functional validation of key genes was performed through scratch and invasion assays in GBM cells.

RESULTS

Our analyses revealed four core CAF-related genes, leading to the establishment of CAFscore. Notably, patients in the high CAFscore group exhibited significantly reduced survival and exhibited enrichment in epithelial-mesenchymal transition (EMT) and inflammation response pathways. Furthermore, CAFscore showed a significant negative correlation with the sensitivity to irinotecan and its analogs, while demonstrating a positive correlation with sensitivity to 505,124 (a TGFβRI inhibitor). LRP10 emerged as a central gene within the CAFscore, displaying markedly elevated expression in GBM and a strong association with CAF infiltration. Silencing LRP10 significantly inhibited the invasive capabilities of GBM cells.

CONCLUSION

This study presented the first CAF related prognostic model (CAFscore) in GBM, and demonstrated that the model could effectively guide patient prognosis and potentially inform personalized treatment strategies. The core gene of CAFscore, LRP10, was significantly overexpressed in GBM and might play a pivotal role in regulating CAF infiltration as well as tumor invasion and metastasis, highlighting LRP10 as a promising therapeutic target for GBM management.

摘要

背景

最近的研究已确定胶质母细胞瘤(GBM)中存在癌症相关成纤维细胞(CAF),但其生物学作用和潜在机制仍知之甚少。本研究旨在构建一种与CAF相关的预后模型,以指导患者的预后和治疗策略。

方法

我们采用了各种生物信息学方法,包括富集分析、加权基因共表达网络分析(WGCNA)、套索回归分析以及XGBoost和随机森林等机器学习技术,来开发一种名为CAFscore的新型风险指数。将患者分为高CAFscore组和低CAFscore组,进行后续生存分析。计算CAFscore的曲线下面积(AUC)和一致性指数(C指数),并与其他临床特征和现有预后模型进行比较。使用Oncopredict软件包进行药物敏感性评估。通过GBM细胞的划痕和侵袭试验对关键基因进行功能验证。

结果

我们的分析揭示了四个与CAF相关的核心基因,从而建立了CAFscore。值得注意的是,高CAFscore组的患者生存期显著缩短,并且在上皮-间质转化(EMT)和炎症反应途径中表现出富集。此外,CAFscore与伊立替康及其类似物的敏感性呈显著负相关,而与对505,124(一种TGFβRI抑制剂)的敏感性呈正相关。LRP10成为CAFscore中的核心基因,在GBM中表达明显升高,并且与CAF浸润密切相关。沉默LRP10可显著抑制GBM细胞的侵袭能力。

结论

本研究提出了GBM中首个与CAF相关的预后模型(CAFscore),并证明该模型可以有效地指导患者预后,并可能为个性化治疗策略提供参考。CAFscore的核心基因LRP10在GBM中显著过表达,可能在调节CAF浸润以及肿瘤侵袭和转移中起关键作用,突出了LRP10作为GBM治疗有前景的靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4682/11387281/683500858885/12672_2024_1314_Fig1_HTML.jpg

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