Determination of single or paired-kernel-rows is controlled by two quantitative loci during maize domestication.

qPEDS1, a major quantitative trait locus that determines kernel row number during domestication, harbors the proposed causal gene Zm00001d033675, which may affect jasmonic acid biosynthesis and determine the fate of spikelets. Maize domestication has achieved the production of maize with enlarged ears, enhancing grain productivity dramatically. Kernel row number (KRN), an important yield-related trait, has increased from two rows in teosinte to at least eight rows in modern maize. However, the genetic mechanisms underlying this process remain unclear. To understand KRN domestication, we developed a teosinte-maize BCF population by introgressing teosinte into a maize background. We identified one line, Teosinte ear rank1 (Ter1), with only 5-7 kernel rows which is fewer than those in almost all maize inbred lines. We detected two quantitative trait loci underlying Ter1 and fine-mapped the major one to a 300-kb physical interval. Two candidate genes, Zm674 and Zm675, were identified from 26 maize reference genomes and teosinte bacterial artificial chromosome sequences. Finally, we proposed that Ter1 affects jasmonic acid biosynthesis in the developing ear to determine KRN by the fate of spikelets. This study provides novel insights into the genetic and molecular mechanisms underlying KRN domestication and candidates for de novo wild teosinte domestication.