Suppr超能文献

成年印度人明显获得性再生障碍性贫血的全外显子组测序:三级护理医院的初步经验。

Whole Exome Sequencing of Adult Indians with Apparently Acquired Aplastic Anaemia: Initial Experience at Tertiary Care Hospital.

作者信息

Mehta Sudhir, Medicherla Krishna Mohan, Gulati Sandhya, Sharma Nidhi, Parveen Rabia, Mishra Ashwani Kumar, Gupta Sonal, Suravajhala Prashanth

机构信息

Department of General Medicine, SMS Medical College and Hospital, JLN Marg, Jaipur 302004, India.

Department of Biotechnology and Bioinformatics, Birla Institute of Scientific Research, Jaipur 302011, India.

出版信息

Diseases. 2024 Sep 23;12(9):225. doi: 10.3390/diseases12090225.

Abstract

Aplastic anaemia (AA) is a rare hypocellular bone marrow disease with a large number of mutations in the telomerase reverse transcriptase gene (TERT), leading to bone marrow failure. We used our benchmarked whole exome sequencing (WES) pipeline to identify variants in adult Indian subjects with apparently acquired AA. For 36 affected individuals, we sequenced coding regions to a mean coverage of 100× and a sufficient depth was achieved. Downstream validation and filtering to call mutations in patients treated with Cyclosporin A (CsA) identified variants associated with AA. We report four mutations across the genes associated with the AA, and , in addition to other genes, viz., , , /, and . We demonstrate the application of WES to discover the variants associated with CsA responders and non-responders in an Indian cohort.

摘要

再生障碍性贫血(AA)是一种罕见的骨髓细胞减少性疾病,端粒酶逆转录酶基因(TERT)存在大量突变,导致骨髓衰竭。我们使用经过基准测试的全外显子组测序(WES)流程,在成年印度受试者中鉴定明显获得性AA的变异。对于36名受影响个体,我们对编码区进行测序,平均覆盖度达到100×,并获得了足够的深度。对接受环孢素A(CsA)治疗的患者进行下游验证和筛选以调用突变,从而确定与AA相关的变异。我们报告了与AA相关基因以及其他基因(即 、 、 / 和 )中的四个突变。我们展示了WES在发现印度队列中与CsA反应者和无反应者相关变异方面的应用。

相似文献

3
Mutations in TERT, the gene for telomerase reverse transcriptase, in aplastic anemia.
N Engl J Med. 2005 Apr 7;352(14):1413-24. doi: 10.1056/NEJMoa042980.
4
Novel telomerase reverse transcriptase gene mutation in a family with aplastic anaemia.
Fam Cancer. 2024 Nov;23(4):635-639. doi: 10.1007/s10689-024-00399-8. Epub 2024 May 25.
5
Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants.
Proc Natl Acad Sci U S A. 2015 Apr 28;112(17):5473-8. doi: 10.1073/pnas.1418631112. Epub 2015 Mar 31.
6
Whole exome sequencing reveals rare variants linked to congenital pouch colon.
Sci Rep. 2018 Apr 27;8(1):6646. doi: 10.1038/s41598-018-24967-y.
8
Astragalus polysaccharide ameliorates bone marrow haematopoietic failure in mice with aplastic anaemia via the Hippo/TERT signalling pathway.
Heliyon. 2024 Sep 29;10(19):e38452. doi: 10.1016/j.heliyon.2024.e38452. eCollection 2024 Oct 15.
10
Comparison of Exome and Genome Sequencing Technologies for the Complete Capture of Protein-Coding Regions.
Hum Mutat. 2015 Aug;36(8):815-22. doi: 10.1002/humu.22813. Epub 2015 Jun 11.

本文引用的文献

1
Treatment of newly diagnosed severe aplastic anemia in children: Evidence-based recommendations.
Pediatr Blood Cancer. 2024 Aug;71(8):e31070. doi: 10.1002/pbc.31070. Epub 2024 May 16.
5
Guidelines for the diagnosis and management of adult aplastic anaemia: A British Society for Haematology Guideline.
Br J Haematol. 2024 Mar;204(3):784-804. doi: 10.1111/bjh.19236. Epub 2024 Jan 21.
6
Granulocyte transfusions in severe aplastic anemia.
Haematologica. 2024 Jun 1;109(6):1792-1799. doi: 10.3324/haematol.2023.283826.
7
Aplastic anemia after SARS-CoV-2 infection or vaccines: case series and literature review.
Blood Transfus. 2024 May;22(3):266-272. doi: 10.2450/BloodTransfus.500. Epub 2023 Sep 4.
9
Comprehensive laboratory diagnosis of Fanconi anaemia: comparison of cellular and molecular analysis.
J Med Genet. 2023 Aug;60(8):801-809. doi: 10.1136/jmg-2022-108714. Epub 2023 Mar 9.
10
Recent advances in the diagnosis and treatment of pediatric acquired aplastic anemia.
Int J Hematol. 2024 Mar;119(3):240-247. doi: 10.1007/s12185-023-03564-4. Epub 2023 Mar 3.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验