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设计用于[基因名称]的新型引物组以加强[物种名称]的分类学和系统发育研究。

Designing A Novel Primer Set for Gene to Enhance Taxonomic and Phylogenetic Studies of Species.

作者信息

Park Jun Hyuk, Choi Young-Joon

机构信息

Department of Biological Science, Kunsan National University, Gunsan, Korea.

出版信息

Mycobiology. 2024 Jul 21;52(4):231-235. doi: 10.1080/12298093.2024.2379101. eCollection 2024.

Abstract

(Erysiphaceae, Ascomycota) is an obligate plant pathogenic group causing powdery mildew on diverse angiosperm plants, including economically significant crops. Despite advancements in the taxonomy and phylogeny of species using ribosomal DNA markers (ITS and LSU), several taxonomic issues remain unresolved. Previously, the glyceraldehyde-3-phosphate dehydrogenase () gene, which exhibits higher nucleotide variation, has been proposed as an additional marker for powdery mildew species. In this study, we designed a new primer set (GoGPD-F and GoGPD-R) to improve the PCR success and efficiency of the gene across various species and dried herbarium specimens. The primers were successful in amplifying and sequencing the gene in sixteen species, including six species not previously registered in GenBank and two undescribed species. This development is a significant contribution to future research on the identification, taxonomy, and phylogeny of species, offering a more robust tool for resolving existing taxonomic issues.

摘要

白粉菌科(子囊菌门)是一类专性植物病原菌,可在包括经济作物在内的多种被子植物上引发白粉病。尽管利用核糖体DNA标记(ITS和LSU)在物种分类学和系统发育方面取得了进展,但仍有一些分类学问题尚未解决。此前,已提出甘油醛-3-磷酸脱氢酶()基因,该基因具有较高的核苷酸变异,可作为白粉菌物种的额外标记。在本研究中,我们设计了一组新引物(GoGPD-F和GoGPD-R),以提高该基因在各种白粉菌物种和干燥标本上的PCR成功率和效率。这些引物成功地扩增并测序了16种白粉菌物种的该基因,其中包括6种此前未在GenBank中登记的物种和2种未描述的物种。这一进展为未来白粉菌物种的鉴定、分类学和系统发育研究做出了重大贡献,为解决现有分类学问题提供了更强大的工具。

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