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关于该目的分类学注释:描述了 12 个新的科和 21 个科的修订描述。

A taxonomic note on the order : description of 12 novel families and emended description of 21 families.

机构信息

National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, PR China.

Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University, Wuhan, 430070, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Nov;74(11). doi: 10.1099/ijsem.0.006539.

Abstract

The order , belonging to class , is globally distributed in various ecosystems. Currently, this order comprised 12 families that show vast phenotypic, ecological and genotypic variation. The classification of at the family level is currently mainly based on 16S rRNA gene sequencing analysis and the presence of shared phenotypic characteristics, resulting in noticeable anomalies. Our present study revises the taxonomy of based on 1080 available high-quality genome sequences of type strains. The evaluated parameters included the core-genome phylogeny, pairwise average aa identity, lineage-specific core genes, physiological criteria and ecological parameters. Based on the results of this polyphasic approach, we propose that the order be reclassified into 41 families, which include the existing 12 families, 17 families in a recent Validation List in the (Validation List no. 215) and 12 novel families for which we propose the names , , , , , , , , , , and . This work represents a genomic sequence-based and systematic framework for classifying the order at the family level, providing new insights into its evolution.

摘要

该目属于,在全球各个生态系统中均有分布。目前,该目包含 12 个科,表现出巨大的表型、生态和基因型变化。目前,该目的分类主要基于 16S rRNA 基因测序分析和共享表型特征的存在,这导致了明显的异常。本研究基于 1080 个可用的高质量模式菌株基因组序列,对进行了修订。评估的参数包括核心基因组系统发育、成对平均 aa 同一性、谱系特异性核心基因、生理标准和生态参数。基于多相方法的结果,我们建议将目重新分类为 41 个科,其中包括现有的 12 个科、最近在(第 215 号确认清单)中确认的 17 个科以及 12 个新科,我们为这些科提出了以下名称:、、、、、、、、、和。这项工作代表了基于基因组序列的系统框架,用于对目进行家族水平的分类,为其进化提供了新的见解。

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