Computational Chemistry Laboratory, Chemistry Department, Faculty of Science, Minia University, Minia, Egypt.
School of Health Sciences, University of KwaZulu-Natal, Westville Campus, Durban, South Africa.
PLoS One. 2024 Nov 22;19(11):e0313885. doi: 10.1371/journal.pone.0313885. eCollection 2024.
The study of the interactions between biomolecules and nanostructures is quite fascinating. Herein, the adsorption propensity of beryllium oxide (Be12O12) nanocarrier toward nucleobases (NBs) was investigated. In terms of DFT calculations, the adsorption tendency of Be12O12 toward NBs, including cytosine (NB-C), guanine (NB-G), adenine (NB-A), thymine (NB-T), and uracil (NB-U), was unveiled through various configurations. Geometrical, electronic, and energetic features for Be12O12, NBs, and their associated complexes were thoroughly evaluated at M06-2X/6-311+G** level of theory. The potent adsorption process within NBs∙∙∙Be12O12 complexes was noticed through favorable interaction (Eint) and adsorption (Eads) energies with values up to -53.04 and -38.30 kcal/mol, respectively. Generally, a significant adsorption process was observed for all studied complexes, and the favorability followed the order: NB-C∙∙∙ > NB-G∙∙∙ > NB-A∙∙∙ > NB-T∙∙∙ > NB-U∙∙∙Be12O12 complexes. Out of all studied complexes, the most potent adsorption was found for NB-C∙∙∙Be12O12 complex within configuration A (Eint = -53.04 kcal/mol). In terms of energy decomposition, SAPT analysis revealed electrostatic (Eelst) forces to be dominant within the studied adsorption process with values up to -99.88 kcal/mol. Analyzing QTAIM and NCI, attractive intermolecular interactions within the studied complexes were affirmed. From negative values of thermodynamic parameters, the nature of the considered adsorption process was revealed to be spontaneous and exothermic. Regarding density of state, IR, and Raman analyses, the occurrence of the adsorption process within NBs∙∙∙Be12O12 complexes was confirmed. Noticeable short recovery time values were observed for all studied complexes, confirming the occurrence of the desorption process. The findings provided fundamental insights into the potential application of Be12O12 nanocarrier in drug and gene delivery processes.
研究生物分子和纳米结构之间的相互作用非常有趣。在此,研究了氧化铍(Be12O12)纳米载体对碱基(NBs)的吸附倾向。通过DFT 计算,通过各种构型揭示了 Be12O12 对包括胞嘧啶(NB-C)、鸟嘌呤(NB-G)、腺嘌呤(NB-A)、胸腺嘧啶(NB-T)和尿嘧啶(NB-U)在内的 NBs 的吸附趋势。在 M06-2X/6-311+G**理论水平上,彻底评估了 Be12O12、NBs 及其相关配合物的几何、电子和能量特征。在 NBs∙∙∙Be12O12 配合物中,通过有利的相互作用(Eint)和吸附(Eads)能量,观察到了强大的吸附过程,其值高达-53.04 和-38.30 kcal/mol。通常,对于所有研究的配合物,观察到了显著的吸附过程,其有利程度遵循以下顺序:NB-C∙∙∙ > NB-G∙∙∙ > NB-A∙∙∙ > NB-T∙∙∙ > NB-U∙∙∙Be12O12 配合物。在所有研究的配合物中,在构型 A 中发现最强大的吸附是 NB-C∙∙∙Be12O12 配合物(Eint = -53.04 kcal/mol)。就能量分解而言,SAPT 分析表明静电(Eelst)力在研究的吸附过程中占主导地位,其值高达-99.88 kcal/mol。分析 QTAIM 和 NCI,证实了研究配合物之间的吸引力分子间相互作用。从热力学参数的负值可以看出,考虑到吸附过程的本质是自发和放热的。关于密度状态、IR 和 Raman 分析,确认了 NBs∙∙∙Be12O12 配合物中吸附过程的发生。观察到所有研究的配合物都有明显的短恢复时间值,这证实了解吸过程的发生。这些发现为 Be12O12 纳米载体在药物和基因传递过程中的潜在应用提供了基础见解。