Department of Clinical Laboratory, The Affiliated Hospital of Yunnan University (The Second People's Hospital of Yunnan Province), Kunming, Yunnan, China.
Department of Clinical Laboratory, Affiliated Qujing Hospital of Kunming Medical University (The First People's Hospital of Qujing), Qujing, Yunnan, China.
Front Cell Infect Microbiol. 2024 Nov 12;14:1492700. doi: 10.3389/fcimb.2024.1492700. eCollection 2024.
is an emerging hospital-acquired bacterial pathogen, particularly strains harboring plasmid-mediated carbapenemase genes. Here, we recovered and characterized a multidrug-resistant strain, -producing LS81, which was isolated from the abdominal drainage fluid of a clinical patient in China, and further characterized the co-harboring plasmid. LS81 tested positive for the genes by PCR sequencing, with located on a plasmid as confirmed by S1 nuclease pulsed-field gel electrophoresis combined with Southern blotting. In the transconjugants, the genes were successfully transferred to the recipient strain EC600. Whole-genome sequencing and bioinformatics analysis confirmed that this strain belongs to sequence type 196 (ST196), with a complete genome comprising a 5,926,662bp circular chromosome and an 81,451bp IncM2 plasmid encoding (designated pLS81-KPC). The IncM2 plasmid carried multiple β-lactamase genes such as , , and inserted in truncated Tn with the distinctive core structure IS- -IS. A comparison with 46 genomes available in the NCBI database revealed that the closest phylogenetic relative of LS81 is a clinical isolate from a wound swab in the United Kingdom. Ultimately, the pan-genomic analysis unveiled a substantial accessory genome within the strain, alongside significant genomic plasticity within the species, emphasizing the necessity for continuous surveillance of this pathogen in clinical environments.
是一种新兴的医院获得性细菌病原体,特别是携带质粒介导碳青霉烯酶基因的菌株。在这里,我们从中国一位临床患者的腹腔引流液中分离并鉴定了一株多药耐药株 - 产生的 LS81,并进一步对其共存质粒进行了特征描述。通过 PCR 测序,LS81 检测到 基因呈阳性,通过 S1 核酸酶脉冲场凝胶电泳结合 Southern 印迹证实 基因位于质粒上。在转导子中, 基因成功转移到受体菌株 EC600 上。全基因组测序和生物信息学分析证实该菌株属于 196 型序列(ST196),其完整基因组由 5926662bp 环状染色体和一个 81451bp IncM2 质粒组成,该质粒编码 (命名为 pLS81-KPC)。IncM2 质粒携带多种β-内酰胺酶基因,如 、 和 ,插入带有独特核心结构 IS- -IS 的截断 Tn 中。与 NCBI 数据库中 46 个可用基因组的比较表明,LS81 的最接近的系统发育相关物是来自英国伤口拭子的临床分离株。最终,泛基因组分析揭示了该菌株具有丰富的辅助基因组,同时 种内具有显著的基因组可塑性,强调了在临床环境中对这种病原体进行持续监测的必要性。