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用于多药药理学分析和鉴定鸡冠爵床抗炎靶点的综合计算策略

Integrated computational strategies for Polypharmacological profiling and identification of anti-inflammatory targets in Rungia pectinata L.

作者信息

Zaheen Alaiha, Rajkhowa Sanchaita, Al-Hussain Sami A, Zaki Magdi E A

机构信息

Centre for Biotechnology and Bioinformatics, Dibrugarh University, Dibrugarh, India.

Department of Chemistry, Imam Mohammad Ibn Saud Islamic University (IMSIU), Riyadh, Saudi Arabia.

出版信息

J Cell Mol Med. 2024 Dec;28(23):e70158. doi: 10.1111/jcmm.70158.

Abstract

Rungia pectinata L. is an ethnomedicinal herb belonging to the Acanthaceae family and it presents a promising avenue for medicinal exploration, deeply rooted in traditional practices. Earlier research has demonstrated that the herb can effectively relieve the classic symptoms of inflammation. Nevertheless, comprehensive studies into the mechanisms underlying R. pectinata's beneficial impact on inflammation pathways, remain scarce. Hence, we employed an integrated approach combining network pharmacology, molecular docking and molecular dynamics simulations to explore the mechanisms underlying R. pectinata's anti-inflammatory activity. For this study, seven inflammation-related active ingredients were identified among 38 candidates, revealing 22 intersecting genes associated with inflammation. Protein-protein interaction (PPI) networks revealed three therapeutic targets: IL1B, PTGS2 and SRC. GO and KEGG pathway enrichment analyses indicated that the effects of R. pectinata are mediated by genes related to inflammation and cancer. Molecular docking studies identified trans-nerolidyl formate and widdrol as lead compounds while molecular dynamics simulations indicated stable compound-target complexes, with MM-PBSA calculations showing superior free energy values for SRC, suggesting implications in cancer pathways. Overall, this study offers valuable insights into the anti-inflammatory effects of R. pectinata, which may be mediated through key pathways involved in inflammation and cancer. This highlights the potential of R. pectinata in both anti-inflammatory and anticancer therapies. However, further experimental validation is necessary to confirm these findings.

摘要

鸡冠爵床是一种属于爵床科的民族药用草本植物,它为药物探索提供了一条有前景的途径,深深植根于传统实践。早期研究表明,这种草药能有效缓解炎症的典型症状。然而,对鸡冠爵床对炎症途径有益影响的潜在机制的全面研究仍然很少。因此,我们采用了网络药理学、分子对接和分子动力学模拟相结合的综合方法,以探索鸡冠爵床抗炎活性的潜在机制。在本研究中,在38种候选成分中鉴定出7种与炎症相关的活性成分,揭示了22个与炎症相关的交叉基因。蛋白质-蛋白质相互作用(PPI)网络揭示了三个治疗靶点:IL1B、PTGS2和SRC。基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析表明,鸡冠爵床的作用是由与炎症和癌症相关的基因介导的。分子对接研究确定了反式橙花叔醇甲酸酯和威德酚为先导化合物,而分子动力学模拟表明化合物-靶点复合物稳定,MM-PBSA计算显示SRC具有更高的自由能值,表明其在癌症通路中的作用。总体而言,本研究为鸡冠爵床的抗炎作用提供了有价值的见解,其抗炎作用可能是通过参与炎症和癌症的关键途径介导的。这突出了鸡冠爵床在抗炎和抗癌治疗中的潜力。然而,需要进一步的实验验证来证实这些发现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c4a2/11615512/d93501ba1e08/JCMM-28-e70158-g017.jpg

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