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当古生物学遇上基因组学:两种剑齿猫科动物(猫科:剑齿虎亚科)的完整线粒体基因组

When paleontology meets genomics: complete mitochondrial genomes of two saber-toothed cats' species (Felidae: Machairodontinae).

作者信息

Rodrigues-Oliveira Igor Henrique, Batista da Silva Iuri, Rocha Renan Rodrigues, Soares Rafael Augusto Silva, Menegidio Fabiano Bezerra, Garcia Caroline, Pasa Rubens, Kavalco Karine Frehner

机构信息

Institute of Biological Sciences, Federal University of Minas Gerais, Belo Horizonte, Minas Gerais, Brazil.

Laboratory of Bioinformatics and Genomics, Federal University of Viçosa Campus Rio Paranaíba, Rio Paranaíba, Minas Gerais, Brazil.

出版信息

Mitochondrial DNA A DNA Mapp Seq Anal. 2025 Apr-May;35(3-4):102-110. doi: 10.1080/24701394.2024.2439433. Epub 2024 Dec 7.

Abstract

Within the Machairodontinae subfamily, commonly referred to as saber-toothed cats, it is worth noting that only two species, namely , recognized as the scimitar-toothed cat, and , renowned as the saber-toothed tiger, possess partial mitochondrial genomes accessible in the NCBI database. These sequences, however, do not include the mitogenome control region (mtDNA control region) and have several gaps in their genes, including protein-coding genes (PCGs) that are widely used in phylogenetic analysis. In this study, we aimed to obtain a complete assembly of the mitogenomes of these two species from next-generation sequencing data available at NCBI's SRA. The assemblies showed complete mitogenomes with 17,323bp () and 16,769 bp (), both with 13 PCGs, 22tRNAs, two rRNAs and the mtDNA control region, with all genes following the standard order and position of most vertebrate mitogenomes. Despite being generally very similar to previous studies, our phylogeny and molecular dating reveals an earliest divergence between North American and North Sea specimens which may be related to an Early Pleistocene migration across Beringia.

摘要

在剑齿虎亚科(通常被称为剑齿猫)中,值得注意的是,只有两个物种,即被认定为弯刀齿猫的物种和以剑齿虎闻名的物种,其部分线粒体基因组可在NCBI数据库中获取。然而,这些序列不包括线粒体基因组控制区(mtDNA控制区),并且其基因存在若干缺口,包括在系统发育分析中广泛使用的蛋白质编码基因(PCGs)。在本研究中,我们旨在从NCBI的SRA中可用的二代测序数据中获得这两个物种线粒体基因组的完整组装。组装结果显示完整的线粒体基因组,分别为17323bp(物种 )和16769bp(物种 ),均包含13个PCGs、22个tRNAs、两个rRNAs和mtDNA控制区,所有基因均遵循大多数脊椎动物线粒体基因组的标准顺序和位置。尽管总体上与先前的研究非常相似,但我们的系统发育和分子定年显示,北美和北海标本之间最早的分歧可能与早更新世穿越白令陆桥的迁徙有关。

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