Li Jin, Wang Lantao, Yu Bin, Su Jie, Dong Shimin
Department of Emergency, The Fourth Hospital of Hebei Medical University, Shijiazhuang, Hebei, China.
Department of Emergency, Third Hospital of Hebei Medical University, Shijiazhuang, Hebei, China.
Front Immunol. 2024 Nov 25;15:1445858. doi: 10.3389/fimmu.2024.1445858. eCollection 2024.
Sepsis is an unusual systemic reaction to what is sometimes an otherwise ordinary infection, and it probably represents a pattern of response by the immune system to injury. However, the relationship between biomarkers and sepsis remains unclear. This study aimed to find potential molecular biomarkers, which could do some help to patients with sepsis.
The sepsis dataset GSE28750, GSE57065 was downloaded from the GEO database, and ten patients with or without sepsis from our hospital were admitted for RNA-seq and the differentially expressed genes (DEGs) were screened. The Metascape database was used for functional enrichment analysis and was used to found the differential gene list. Protein-protein interaction network was used and further analyzed by using Cytoscape and STRING. Logistic regression and Correlation analysis were used to find the potential molecular biomarkers.
Taking the intersection of the three datasets yielded 287 differential genes. The enrichment results included Neutrophil degranulation, leukocyte activation, immune effectors process, positive regulation of immune response, regulation of leukocyte activation. The top 10 key genes of PPI connectivity were screened using cytoHubba plugin, which were , , , , , , , , , and . All of the hub genes are higher expressed in health group of different databases. Logistic regression showed that , and proteins were analyzed and all of them were statistically significant. Correlation analysis showed that there was a statistically significant correlation between , and .
, , , , , , , , , are key genes in sepsis, which associated with the development of sepsis. However, , and may serve as the attractively potential molecular biomarkers for sepsis.
脓毒症是对有时原本普通的感染产生的一种异常全身反应,它可能代表免疫系统对损伤的一种反应模式。然而,生物标志物与脓毒症之间的关系仍不清楚。本研究旨在寻找潜在的分子生物标志物,以帮助脓毒症患者。
从基因表达综合数据库(GEO数据库)下载脓毒症数据集GSE28750、GSE57065,并纳入我院10例有或无脓毒症的患者进行RNA测序,筛选差异表达基因(DEGs)。使用Metascape数据库进行功能富集分析,并用于找出差异基因列表。构建蛋白质-蛋白质相互作用网络,并使用Cytoscape和STRING进行进一步分析。采用逻辑回归和相关性分析来寻找潜在的分子生物标志物。
取三个数据集的交集得到287个差异基因。富集结果包括中性粒细胞脱颗粒、白细胞活化、免疫效应过程、免疫反应的正调控、白细胞活化的调控。使用cytoHubba插件筛选出PPI连通性排名前10的关键基因,分别为 、 、 、 、 、 、 、 、 、 。所有枢纽基因在不同数据库的健康组中表达更高。逻辑回归分析显示, 、 和 蛋白均具有统计学意义。相关性分析显示, 、 和 之间存在统计学显著相关性。
、 、 、 、 、 、 、 、 、 是脓毒症中的关键基因,与脓毒症的发生发展相关。然而, 、 和 可能是脓毒症极具潜力的分子生物标志物。