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对翻译因子Dbp1和Ded1的分析表明,细胞对热应激的反应与应激颗粒的形成是可分离的。

Analyses of translation factors Dbp1 and Ded1 reveal the cellular response to heat stress to be separable from stress granule formation.

作者信息

Kuwayama Naohiro, Powers Emily Nicole, Siketanc Matej, Sousa Camila Ines, Reynaud Kendra, Jovanovic Marko, Hondele Maria, Ingolia Nicholas Thomas, Brar Gloria Ann

机构信息

Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA 94720, USA.

Biozentrum, Center for Molecular Life Sciences, University of Basel, 4056 Basel, Switzerland.

出版信息

Cell Rep. 2024 Dec 24;43(12):115059. doi: 10.1016/j.celrep.2024.115059. Epub 2024 Dec 13.

Abstract

Ded1 and Dbp1 are paralogous conserved DEAD-box ATPases involved in translation initiation in yeast. In long-term starvation states, Dbp1 expression increases and Ded1 decreases, whereas in cycling mitotic cells, Dbp1 is absent. Inserting DBP1 in place of DED1 cannot replace Ded1 function in supporting mitotic translation, partly due to inefficient translation of the DBP1 coding region. Global translation measurements, activity of mRNA-tethered proteins, and growth assays show that-even at matched protein levels-Ded1 is better than Dbp1 at activating translation, especially for mRNAs with structured 5' leaders. Heat-stressed cells normally downregulate translation of structured housekeeping transcripts and halt growth, but neither occurs in Dbp1-expressing cells. This failure to halt growth in response to heat is not based on deficient stress granule formation or failure to reduce bulk translation. Rather, it depends on heat-triggered loss of Ded1 function mediated by an 11-amino-acid interval within its intrinsically disordered C terminus.

摘要

Ded1和Dbp1是参与酵母翻译起始的同源保守DEAD-box ATP酶。在长期饥饿状态下,Dbp1表达增加而Ded1减少,而在循环有丝分裂细胞中,Dbp1不存在。用DBP1替代DED1不能取代Ded1在支持有丝分裂翻译中的功能,部分原因是DBP1编码区的翻译效率低下。全局翻译测量、mRNA拴系蛋白的活性和生长试验表明,即使在蛋白质水平匹配的情况下,Ded1在激活翻译方面也比Dbp1更好,尤其是对于具有结构化5' 前导序列的mRNA。热应激细胞通常会下调结构化管家转录本的翻译并停止生长,但在表达Dbp1的细胞中这两种情况都不会发生。这种对热不停止生长的现象并非基于应激颗粒形成缺陷或整体翻译减少失败。相反,它取决于由其内在无序的C末端内的11个氨基酸间隔介导的热触发的Ded1功能丧失。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7893/11759133/2c7314417cef/nihms-2044454-f0002.jpg

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