The in situ monitoring of dynamic covalent macromolecular boronate esters represents a difficult task. In this report, we present an in situ method using fluoride coordination and B NMR spectroscopy to determine the amount of boronate esters in a mixture of boronic acids and cis-diols. With fluoride coordination, the boronic acid and boronate esters afforded trifluoroborate and fluoroboronate esters, giving identical resonances at 3 and 9 ppm in the B NMR spectra. The same titration did not alter the resonance of amine-coordinated boronate esters, which gave resonances of 14 ppm in the B NMR spectra. Therefore, boronic acids, boronate esters, and amine-coordinated boronate esters gave three identical resonances, and the ratio of each component was obtained by deconvolution for a further equilibrium analysis. This method monitored the conversion among three species in various conditions, including separation. Accordingly, boronate esters were more stable after precipitation than chromatography, in which 29% and 20% of boronate esters were lost after purification. This method was applied to study the reaction between the boronic acid-decorated defect lysine dendron () and dopamine. No boronic acid signal was observed after adding 1 equivalent of dopamine; no boronic acid signal was observed in the NMR spectrum. According to the spectrum, the product contains 65% boronate ester and 35% N-B-coordinated derivatives. This method helps identify the presence of the three intermediates and provides more insights into this reaction.