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来自塞尔维亚芸苔属作物的61株野油菜黄单胞菌野油菜致病变种的基因组序列数据。

Genome sequence data for 61 isolates of Xanthomonas campestris pv. campestris from Brassica crops in Serbia.

作者信息

Popović Milovanović Tatjana, Greer Shannon, Iličić Renata, Jelušić Aleksandra, Bown Daisy, Hussain Mikaeel, Harrison Jamie, Grant Murray, Vicente Joana G, Studholme David J

机构信息

Institute for Plant Protection and Environment, Belgrade, Serbia.

School of Life Sciences, University of Warwick, Coventry, UK.

出版信息

Access Microbiol. 2024 Nov 8;6(11). doi: 10.1099/acmi.0.000870.v3. eCollection 2024.

Abstract

This Technical Resource describes genome sequencing data for 61 isolates of the bacterial pathogen pv. collected from and crops between 2010 and 2021 in Serbia. We present the raw sequencing reads and annotated contig-level genome assemblies and determine the races of ten isolates. The data can be used to test hypotheses and phylogeographic analyses and inform the design of informative molecular markers for population genetics studies. When combined with phenotypic data, they could be used to dissect relationships between genotypes and phenotypes such as host range and virulence. Finally, these genome sequences expand our inventory of plasmids known to reside in this pathogen.

摘要

本技术资源描述了2010年至2021年期间在塞尔维亚从[具体作物1]和[具体作物2]作物中收集的61株细菌病原体pv.的基因组测序数据。我们展示了原始测序读数和注释的重叠群水平基因组组装,并确定了10个分离株的小种。这些数据可用于检验假设和系统地理学分析,并为群体遗传学研究设计信息丰富的分子标记提供参考。当与表型数据结合时,它们可用于剖析基因型与表型之间的关系,如宿主范围和毒力。最后,这些基因组序列扩展了我们已知存在于该病原体中的质粒清单。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7ff5/11653112/c215f1325401/acmi-6-00870-g001.jpg

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