Wulandari Febri, Fauzi Ahmad, Da'i Muhammad, Mirzaei Mahmoud, Harismah Kun
Faculty of Pharmacy, Universitas Muhammadiyah Surakarta, Surakarta, Indonesia.
Laboratory of Molecular Computations (LMC), Department of Natural and Mathematical Sciences, Faculty of Engineering, Tarsus University, Tarsus, Turkey.
Heliyon. 2024 Nov 30;10(23):e40769. doi: 10.1016/j.heliyon.2024.e40769. eCollection 2024 Dec 15.
1'-Acetoxychavicol acetate (ACA) eliminates breast cancer cells via the HER2/MAPK/ERK1/2 and PI3K/AKT pathways, and it also directly influences endocrine resistance by both enhancing pro-apoptotic signals and suppressing pro-survival molecules. This study utilized bioinformatics to assess ACA target genes for lapatinib-resistant breast cancer. We identified differentially expressed genes (DEGs) using GSE16179 microarray data. DEGs from ACA-treated and lapatinib-resistant cells were analyses using Panther DB, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, and protein-protein interaction (PPI) network analysis. Genomic mutations, expression levels, prognostic significance, and ROC analysis were examined in selected genes. We used AutoDock Vina to conduct ACA molecular docking with potential target genes. In the PPI network analysis, BCL2, CXCR2, and CDC42 were the three highest-scoring genes. Genetic modification analysis identified PLAU and SSTR3 as the genes most frequently altered in breast cancer samples. The RTK-Ras pathway is likely to be affected by changes in BCL2, CXCR2, CDC42, SSTR3, PLAU, ICAM1, IGF1R, and MET genes. Patients with breast cancer who had lower levels of BCL2, SSTR3, PLAU, ICAM1, IGF1R, and MET had worse overall survival compared to other groups. ACA exhibited moderate binding affinity to BCL2, SSTR3, PLAU, ICAM1, IGF1R, and MET. Overall, ACA might counteract breast cancer resistance to lapatinib by targeting BCL2, SSTR3, PLAU, ICAM1, IGF1R, and MET. Further in vitro studies involving gene silencing could provide more detailed insights into the mechanism by which ACA combats lapatinib resistance.
1'-乙酰氧基胡椒酚乙酸酯(ACA)通过HER2/MAPK/ERK1/2和PI3K/AKT途径消除乳腺癌细胞,并且它还通过增强促凋亡信号和抑制促生存分子直接影响内分泌耐药性。本研究利用生物信息学评估ACA针对拉帕替尼耐药乳腺癌的靶基因。我们使用GSE16179微阵列数据鉴定差异表达基因(DEG)。使用Panther数据库、京都基因与基因组百科全书(KEGG)通路富集分析和蛋白质-蛋白质相互作用(PPI)网络分析对来自ACA处理的细胞和拉帕替尼耐药细胞的DEG进行分析。对选定基因进行基因组突变、表达水平、预后意义和ROC分析。我们使用AutoDock Vina对ACA与潜在靶基因进行分子对接。在PPI网络分析中,BCL2、CXCR2和CDC42是得分最高的三个基因。基因修饰分析确定PLAU和SSTR3是乳腺癌样本中最常发生改变的基因。RTK-Ras通路可能受到BCL2、CXCR2、CDC42、SSTR3、PLAU、ICAM1、IGF1R和MET基因变化的影响。与其他组相比,BCL2、SSTR3、PLAU、ICAM1、IGF1R和MET水平较低的乳腺癌患者总生存期较差。ACA对BCL2、SSTR3、PLAU、ICAM1、IGF1R和MET表现出中等结合亲和力。总体而言,ACA可能通过靶向BCL2、SSTR3、PLAU、ICAM1、IGF1R和MET来对抗乳腺癌对拉帕替尼的耐药性。涉及基因沉默的进一步体外研究可以提供关于ACA对抗拉帕替尼耐药性机制的更详细见解。