Sutcliffe Rebecca, Doherty Ciaran P A, Morgan Hugh P, Dunne Nicholas J, McCarthy Helen O
School of Pharmacy, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, United Kingdom of Great Britain and Northern Ireland.
School of Pharmacy, Queen's University Belfast, 97 Lisburn Road, Belfast BT9 7BL, United Kingdom of Great Britain and Northern Ireland; Antigenesis Biologics, Crossgar, Northern Ireland, United Kingdom of Great Britain and Northern Ireland.
Biomater Adv. 2025 Apr;169:214153. doi: 10.1016/j.bioadv.2024.214153. Epub 2024 Dec 16.
Cell-penetrating peptides (CPP) have gained rapid attention over the last 25 years; this is attributed to their versatility, customisation, and 'Trojan horse' delivery that evades the immune system. However, the current CPP rational design process is limited, as it requires several rounds of peptide synthesis, prediction and wet-lab validation, which is expensive, time-consuming and requires extensive knowledge in peptide chemistry. Artificial intelligence (AI) has emerged as a promising alternative which can augment the design process, for example by determining physiochemical characteristics, secondary structure, solvent accessibility, disorder and flexibility, as well as predicting in vivo behaviour such as toxicity and peptidase degradation. Other more recent tools utilise supervised machine learning (ML) to predict the penetrative ability of an amino acid sequence. The use of AI in the CPP design process has the potential to reduce development costs and increase the chances of success with respect to delivery. This review provides a survey of in silico tools and AI platforms which can be utilised in the design process, and the key features that should be taken into consideration when designing next generation CPPs.
在过去25年中,细胞穿透肽(CPP)迅速受到关注;这归因于它们的多功能性、可定制性以及规避免疫系统的“特洛伊木马”式递送。然而,当前CPP的合理设计过程存在局限性,因为它需要多轮肽合成、预测和湿实验室验证,这既昂贵又耗时,并且需要肽化学方面的广泛知识。人工智能(AI)已成为一种有前途的替代方法,它可以增强设计过程,例如通过确定物理化学特性、二级结构、溶剂可及性、无序性和灵活性,以及预测体内行为,如毒性和肽酶降解。其他更新的工具利用监督机器学习(ML)来预测氨基酸序列的穿透能力。在CPP设计过程中使用AI有可能降低开发成本并增加递送成功的机会。本综述概述了可用于设计过程的计算机模拟工具和AI平台,以及设计下一代CPP时应考虑的关键特征。