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对活性污泥系统中粘球菌潜在代谢功能的全面洞察。

Comprehensive Insights into Potential Metabolic Functions of Myxococcota in Activated Sludge Systems.

作者信息

Kurashita Hazuki, Hatamoto Masashi, Tomita Shun, Yamaguchi Takashi, Narihiro Takashi, Kuroda Kyohei

机构信息

Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST).

Department of Science of Technology Innovation, Nagaoka University of Technology.

出版信息

Microbes Environ. 2024;39(4). doi: 10.1264/jsme2.ME24068.

Abstract

Myxobacteria, belonging to the phylum Myxococcota, are ubiquitous in soil, marine, and other environments. A recent metagenomic sequencing ana-lysis showed that Myxococcota are predominant in activated sludge systems; however, their metabolic traits remain unclear. In the present study, we exami-ned the potential biological functions of 46 metagenomic bins of Myxococcota reconstructed from activated sludge samples from four municipal sewage treatment plants. The results obtained showed that most Myxococcota bins had an almost complete set of genes associated with glycolysis and the TCA cycle. The Palsa-1104 and Polyangiales bins contained the glycoside hydrolase GH5 and peptidase M23, which are presumably involved in lysis of the cell wall and cellular cytoplasm, suggesting that some Myxococcota from activated sludge prey on other microorganisms. The cell contact-dependent predatory functions of Myxococcus xanthus are conserved in the family Myxococcaceae, but not in other families. Two bins belonging to Palsa-1104 had phototrophic gene clusters, indicating the potential for heterotrophic and autotrophic metabolism by these microbes. In assessments of the social behavior of Myxococcota in activated sludge, the FruA gene and C-signal gene, which are involved in the regulation of fruiting body formation, were lacking in Myxococcota bins, suggesting their inability to form fruiting bodies. In addition, multiple bins of Myxococcota had novel secondary metabolite biosynthesis gene clusters that may be used for the predation of other bacteria in activated sludge. Our metagenome-based ana-lyses provide novel insights into the microbial interactions associated with Myxococcota in activated sludge ecosystems.

摘要

黏细菌属于黏球菌门,在土壤、海洋和其他环境中广泛存在。最近的宏基因组测序分析表明,黏球菌门在活性污泥系统中占主导地位;然而,它们的代谢特征仍不清楚。在本研究中,我们研究了从四个城市污水处理厂的活性污泥样品中重建的46个黏球菌门宏基因组箱的潜在生物学功能。所得结果表明,大多数黏球菌门箱具有与糖酵解和三羧酸循环相关的几乎完整的基因集。Palsa-1104和多囊菌目箱含有糖苷水解酶GH5和肽酶M23,推测它们参与细胞壁和细胞质的裂解,这表明活性污泥中的一些黏细菌以其他微生物为食。黄色黏球菌的细胞接触依赖性捕食功能在黏球菌科中是保守的,但在其他科中则不然。属于Palsa-1104的两个箱具有光合基因簇,表明这些微生物具有异养和自养代谢的潜力。在评估活性污泥中黏球菌门的社会行为时,黏球菌门箱中缺乏参与子实体形成调控的FruA基因和C信号基因,这表明它们无法形成子实体。此外,多个黏球菌门箱具有新的次生代谢物生物合成基因簇,这些基因簇可能用于捕食活性污泥中的其他细菌。我们基于宏基因组的分析为活性污泥生态系统中与黏球菌门相关的微生物相互作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2987/11821767/eef2a7356056/39_24068-g001.jpg

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