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平行基因扩张推动草食性林鼠的快速饮食适应。

Parallel gene expansions drive rapid dietary adaptation in herbivorous woodrats.

作者信息

Klure Dylan M, Greenhalgh Robert, Orr Teri J, Shapiro Michael D, Dearing M Denise

机构信息

School of Biological Sciences, University of Utah, Salt Lake City, UT, USA.

Department of Biology, New Mexico State University, Las Cruces, NM, USA.

出版信息

Science. 2025 Jan 10;387(6730):156-162. doi: 10.1126/science.adp7978. Epub 2025 Jan 9.

Abstract

How mammalian herbivores evolve to feed on chemically defended plants remains poorly understood. In this study, we investigated the adaptation of two species of woodrats ( and ) to creosote bush (), a toxic shrub that expanded across the southwestern United States after the Last Glacial Maximum. We found that creosote-adapted woodrats have elevated gene dosage across multiple biotransformation enzyme families. These duplication events occurred independently across species and substantially increase expression of biotransformation genes, especially within the glucuronidation pathway. We propose that increased gene dosage resulting from duplication is an important mechanism by which animals initially adapt to novel environmental pressures.

摘要

哺乳动物食草动物如何进化以取食具有化学防御的植物仍知之甚少。在本研究中,我们调查了两种林鼠(Neotoma lepida和Neotoma albigula)对石炭酸灌木(Larrea tridentata)的适应性,石炭酸灌木是一种有毒灌木,在末次盛冰期之后在美国西南部扩散。我们发现,适应石炭酸灌木的林鼠在多个生物转化酶家族中基因剂量增加。这些复制事件在不同物种中独立发生,并显著增加了生物转化基因的表达,尤其是在葡萄糖醛酸化途径中。我们提出,复制导致的基因剂量增加是动物最初适应新环境压力的重要机制。

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3
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4
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5
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6
Protein-to-genome alignment with miniprot.
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9
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10
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