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钾通道中电场刺激离子传导的直接可视化

Direct visualization of electric-field-stimulated ion conduction in a potassium channel.

作者信息

Lee BoRam, White K Ian, Socolich Michael, Klureza Margaret A, Henning Robert, Srajer Vukica, Ranganathan Rama, Hekstra Doeke R

机构信息

Center for Physics of Evolving Systems, Biochemistry & Molecular Biology and the Pritzker School for Molecular Engineering, University of Chicago, Chicago, IL, USA; Modeling and Informatics, Discovery Chemistry, Merck & Co., Inc., South San Francisco, CA, USA.

Department of Molecular and Cellular Physiology and HHMI, Stanford University, Stanford, CA, USA.

出版信息

Cell. 2025 Jan 9;188(1):77-88.e15. doi: 10.1016/j.cell.2024.12.006.

Abstract

Understanding protein function would be facilitated by direct, real-time observation of chemical kinetics in the atomic structure. The selectivity filter (SF) of the K channel provides an ideal model, catalyzing the dehydration and transport of K ions across the cell membrane through a narrow pore. We used a "pump-probe" method called electric-field-stimulated time-resolved X-ray crystallography (EFX) to initiate and observe K conduction in the NaK2K channel in both directions on the timescale of the transport process. We observe both known and potentially new features in the high-energy conformations visited along the conduction pathway, including the associated dynamics of protein residues that control selectivity and conduction rate. A single time series of one channel in action shows the orderly appearance of features observed in diverse homologs with diverse methods, arguing for deep conservation of the dynamics underlying the reaction coordinate in this protein family.

摘要

通过对原子结构中的化学动力学进行直接、实时观察,将有助于理解蛋白质的功能。钾通道的选择性过滤器(SF)提供了一个理想模型,它通过一个狭窄的孔催化钾离子的脱水及跨细胞膜运输。我们使用一种称为电场刺激时间分辨X射线晶体学(EFX)的“泵浦-探测”方法,在运输过程的时间尺度上启动并观察了NaK2K通道中两个方向的钾传导。我们在沿传导途径访问的高能构象中观察到了已知的和潜在的新特征,包括控制选择性和传导速率的蛋白质残基的相关动力学。一个正在运作的通道的单个时间序列显示了通过不同方法在不同同源物中观察到的特征的有序出现,这表明该蛋白质家族中反应坐标背后的动力学具有深度保守性。

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本文引用的文献

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Functional protein dynamics in a crystal.晶体中的功能蛋白动力学。
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Ion Conduction Mechanisms in Potassium Channels Revealed by Permeation Cycles.离子通道中渗透循环揭示的钾离子传导机制。
J Chem Theory Comput. 2023 May 9;19(9):2574-2589. doi: 10.1021/acs.jctc.3c00061. Epub 2023 Apr 11.
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Thermodynamics of ion binding and occupancy in potassium channels.钾通道中离子结合与占据的热力学
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The Persistent Question of Potassium Channel Permeation Mechanisms.钾通道通透机制的持续问题。
J Mol Biol. 2021 Aug 20;433(17):167002. doi: 10.1016/j.jmb.2021.167002. Epub 2021 Apr 20.

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