Lee BoRam, White K Ian, Socolich Michael, Klureza Margaret A, Henning Robert, Srajer Vukica, Ranganathan Rama, Hekstra Doeke R
Center for Physics of Evolving Systems, Biochemistry & Molecular Biology and the Pritzker School for Molecular Engineering, University of Chicago, Chicago, IL, USA; Modeling and Informatics, Discovery Chemistry, Merck & Co., Inc., South San Francisco, CA, USA.
Department of Molecular and Cellular Physiology and HHMI, Stanford University, Stanford, CA, USA.
Cell. 2025 Jan 9;188(1):77-88.e15. doi: 10.1016/j.cell.2024.12.006.
Understanding protein function would be facilitated by direct, real-time observation of chemical kinetics in the atomic structure. The selectivity filter (SF) of the K channel provides an ideal model, catalyzing the dehydration and transport of K ions across the cell membrane through a narrow pore. We used a "pump-probe" method called electric-field-stimulated time-resolved X-ray crystallography (EFX) to initiate and observe K conduction in the NaK2K channel in both directions on the timescale of the transport process. We observe both known and potentially new features in the high-energy conformations visited along the conduction pathway, including the associated dynamics of protein residues that control selectivity and conduction rate. A single time series of one channel in action shows the orderly appearance of features observed in diverse homologs with diverse methods, arguing for deep conservation of the dynamics underlying the reaction coordinate in this protein family.
通过对原子结构中的化学动力学进行直接、实时观察,将有助于理解蛋白质的功能。钾通道的选择性过滤器(SF)提供了一个理想模型,它通过一个狭窄的孔催化钾离子的脱水及跨细胞膜运输。我们使用一种称为电场刺激时间分辨X射线晶体学(EFX)的“泵浦-探测”方法,在运输过程的时间尺度上启动并观察了NaK2K通道中两个方向的钾传导。我们在沿传导途径访问的高能构象中观察到了已知的和潜在的新特征,包括控制选择性和传导速率的蛋白质残基的相关动力学。一个正在运作的通道的单个时间序列显示了通过不同方法在不同同源物中观察到的特征的有序出现,这表明该蛋白质家族中反应坐标背后的动力学具有深度保守性。