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基于微秒时间尺度分子动力学模拟的凝血因子VIII脂质膜结合的原子机制

Atomistic Mechanism of Lipid Membrane Binding for Blood Coagulation Factor VIII with Molecular Dynamics Simulations on a Microsecond Time Scale.

作者信息

Avery Nathan G, Childers Kenneth C, McCarty James, Spiegel Paul Clinton

机构信息

Chemistry Department, Western Washington University, Bellingham, Washington 98225-9038, United States.

出版信息

J Phys Chem B. 2025 Feb 6;129(5):1486-1498. doi: 10.1021/acs.jpcb.4c06575. Epub 2025 Jan 22.

Abstract

During the blood coagulation cascade, coagulation factor VIII (FVIII) is activated by thrombin to form activated factor VIII (FVIIIa). FVIIIa associates with platelet surfaces at the site of vascular damage to form an intrinsic tenase complex with activated factor IX. A working model for FVIII membrane binding involves the association of positively charged FVIII residues with negatively charged lipid headgroups and the burial of hydrophobic residues into the membrane interior. Currently, the atomic details of the FVIII lipid binding interactions and membrane orientation are lacking. This study reports residue-specific FVIII C domain interactions with 1,2-dioleoyl--glycero-3-phosphocholine (DOPC) and 1,2-dioleoyl--glycero-3-phospho-l-serine (DOPS) in atomistic detail. Contact maps between residues in the C domains with different lipid moieties support prior structural data describing how the C domains associate with membranes through electrostatic and hydrophobic interactions. Solvent-accessible surface area analysis quantified the extent to which residues in the C1 and C2 domains bury into the membrane. Calculations of the potential energy between the C domains and DOPC and DOPS revealed an FVIII membrane-binding orientation that agrees with previous experimental data. This study expands our knowledge of the structural basis of FVIII membrane association, which may be critical for the development of next-generation FVIII replacement constructs with improved activity.

摘要

在血液凝固级联反应中,凝血因子VIII(FVIII)被凝血酶激活形成活化因子VIII(FVIIIa)。FVIIIa在血管损伤部位与血小板表面结合,与活化因子IX形成内源性凝血酶原酶复合物。FVIII膜结合的工作模型涉及带正电荷的FVIII残基与带负电荷的脂质头部基团的结合,以及疏水残基埋入膜内部。目前,FVIII脂质结合相互作用和膜取向的原子细节尚不清楚。本研究详细报道了FVIII C结构域与1,2-二油酰基-sn-甘油-3-磷酸胆碱(DOPC)和1,2-二油酰基-sn-甘油-3-磷酸-L-丝氨酸(DOPS)的残基特异性相互作用。C结构域中不同脂质部分的残基之间的接触图支持了先前描述C结构域如何通过静电和疏水相互作用与膜结合的结构数据。溶剂可及表面积分析量化了C1和C2结构域中残基埋入膜中的程度。C结构域与DOPC和DOPS之间的势能计算揭示了FVIII膜结合取向,这与先前的实验数据一致。本研究扩展了我们对FVIII膜结合结构基础的认识,这可能对开发具有更高活性的下一代FVIII替代构建体至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d6c8/11808648/96ca22c80393/jp4c06575_0001.jpg

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