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利用计算生物学和生物信息学研究双酚类化合物在卵巢早衰中的作用及机制。

Investigating the role and mechanisms of bisphenol compounds in premature ovarian insufficiency using computational biology and bioinformatics.

作者信息

Kong Deshui, Nie Yufei, He Haojie, Guo Hongyan

机构信息

Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, China; National Clinical Research Center for Obstetrics and Gynecology (Peking University Third Hospital), Beijing, China.

Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, China; National Clinical Research Center for Obstetrics and Gynecology (Peking University Third Hospital), Beijing, China.

出版信息

Ecotoxicol Environ Saf. 2025 Feb;291:117789. doi: 10.1016/j.ecoenv.2025.117789. Epub 2025 Jan 27.

Abstract

Premature Ovarian Insufficiency refers to the premature decline in ovarian function before the age of 40, resulting in menstrual irregularities or complete cessation of menstruation, and affecting fertility. Widely used bisphenol compounds may have potential health effects, including premature ovarian insufficiency (POI). This study employs computational biology and bioinformatics to investigate the effects of bisphenols (BPs) on POI. Using bioinformatics tools, we identified potential target genes related to both bisphenols and POI, and conducted functional enrichment analysis. Further, we calculated differentially expressed genes for POI, extracted core networks, and explored immune function and screened core genes. Molecular docking and molecular dynamics simulations were used to explore the stable binding between bisphenols and core POI genes. Our results constructed a protein network of 56 potential target genes and extracted core subnetworks. Functional enrichment analysis indicated that estrogen metabolism, estrogen receptor pathways, steroid hormone metabolism, and carbohydrate and lipid metabolism may be involved in the process of BPs-induced POI. The differentially expressed genes obtained through further screening, CYP1A1 and CYP19A1, were subjected to molecular docking and dynamics simulations to reveal the mechanism by which bisphenols participate in estrogen metabolism through their stable binding. Our findings underscore the role of bisphenols in inducing POI and the potential mechanisms involved, providing new directions for further epidemiological and molecular biological research into this regulatory process.

摘要

卵巢早衰是指40岁之前卵巢功能过早衰退,导致月经不规律或完全停经,并影响生育能力。广泛使用的双酚化合物可能对健康有潜在影响,包括卵巢早衰(POI)。本研究采用计算生物学和生物信息学方法来研究双酚(BPs)对POI的影响。利用生物信息学工具,我们鉴定了与双酚和POI相关的潜在靶基因,并进行了功能富集分析。此外,我们计算了POI的差异表达基因,提取了核心网络,探讨了免疫功能并筛选了核心基因。使用分子对接和分子动力学模拟来探索双酚与POI核心基因之间的稳定结合。我们的结果构建了一个包含56个潜在靶基因的蛋白质网络,并提取了核心子网。功能富集分析表明,雌激素代谢、雌激素受体途径、类固醇激素代谢以及碳水化合物和脂质代谢可能参与了双酚诱导POI的过程。通过进一步筛选得到的差异表达基因CYP1A1和CYP19A1,进行了分子对接和动力学模拟,以揭示双酚通过其稳定结合参与雌激素代谢的机制。我们的研究结果强调了双酚在诱导POI中的作用以及潜在机制,为进一步针对这一调节过程的流行病学和分子生物学研究提供了新方向。

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