Kruschel Ryan D, Malone Kyle, Walsh Alison N, Waeber Christian, McCarthy Florence O
School of Chemistry and ABCRF, University College Cork, Western Road, T12K8AF Cork, Ireland.
School of Pharmacy, University College Cork, Pharmacy Building, College Road, T12K8AF Cork, Ireland.
Pharmaceuticals (Basel). 2025 Feb 18;18(2):268. doi: 10.3390/ph18020268.
Sphingosine kinase (SphK) overexpression is observed in many cancers, including breast, renal and leukaemia, which leads to increased cellular proliferation, survival and growth. SphK inhibition has been an attractive target for anticancer drug development for the past decade, with SphK inhibitors such as PF-543 and opaganib exhibiting clinical antitumour effects. By exploiting both CB5468139 and PF-543 as structural leads, we hereby report on the first quinoline-5,8-dione-based SphK inhibitor using a fragment-based approach. The quinoline-5,8-dione framework was developed to incorporate two defined regions, namely a polar quinoline core, which links to an aryl lipophilic chain. All synthetic molecules were characterized by NMR and HRMS and assayed against SphK 1 and 2, and molecular docking studies were performed. A subset of compounds was screened for anticancer activity. As the binding site of SphK accommodates the lipophilic tail of sphingosine, we initially set out to explore the substitution of the C(7) aryl moiety to attain eight novel C(7) ether-linked quinoline-5,8-diones, which were screened for SphK1 and SphK2 activity with good potency identified. To improve SphK binding, structural fragments were adapted from PF-543 to participate in hydrogen bonding within the binding site of SphK1. A model study was performed to yield novel compounds through activated C(2) formyl intermediates. Two pyrrolidine-based quinoline-5,8-diones were assayed for SphK activity, with revealing an improvement of SphK1 binding efficacy relative to the parent compound and (and its precursor ). Molecular modelling on the pyrrolidine quinoline-5,8-dione construct revealed favourable docking, low binding energies and opportunities for further improvement. Although the screening of anticancer activity was inconclusive, low micromolar dual SphK1/2 inhibition with the quinoline-5,8-dione framework has been identified for the first time, and a plausible new binding mode has been identified.
在包括乳腺癌、肾癌和白血病在内的许多癌症中都观察到鞘氨醇激酶(SphK)的过表达,这会导致细胞增殖、存活和生长增加。在过去十年中,抑制SphK一直是抗癌药物开发的一个有吸引力的靶点,像PF - 543和opaganib这样的SphK抑制剂已表现出临床抗肿瘤效果。通过将CB5468139和PF - 543都用作结构先导物,我们在此报告了首个基于喹啉 - 5,8 - 二酮的采用基于片段方法的SphK抑制剂。喹啉 - 5,8 - 二酮骨架经开发以纳入两个特定区域,即一个极性喹啉核心,它与一条芳基亲脂链相连。所有合成分子都通过核磁共振(NMR)和高分辨质谱(HRMS)进行了表征,并针对SphK 1和2进行了测定,还进行了分子对接研究。对一组化合物进行了抗癌活性筛选。由于SphK的结合位点容纳鞘氨醇的亲脂性尾部,我们最初着手探索C(7)芳基部分的取代,以获得8种新型的C(7)醚连接的喹啉 - 5,8 - 二酮,对其进行了SphK1和SphK2活性筛选,并鉴定出了具有良好活性的化合物。为了改善与SphK的结合,从PF - 543改编了结构片段以参与在SphK1结合位点内的氢键形成。进行了一项模型研究以通过活化的C(2)甲酰基中间体产生新型化合物。对两种基于吡咯烷的喹啉 - 5,8 - 二酮进行了SphK活性测定,结果显示相对于母体化合物以及(及其前体),其对SphK1的结合效能有所提高。对吡咯烷喹啉 - 5,8 - 二酮构建体的分子建模显示出有利的对接、低结合能以及进一步改进的机会。尽管抗癌活性筛选尚无定论,但首次鉴定出了具有低微摩尔浓度的对SphK1/2的双重抑制作用的喹啉 - 5,8 - 二酮骨架,并且确定了一种合理的新结合模式。