一种利用氧化还原差异化二芳基卤鎓弹头对氧化还原酶进行基于活性的蛋白质谱分析的通用方法。
A general approach for activity-based protein profiling of oxidoreductases with redox-differentiated diarylhalonium warheads.
作者信息
Krammer Leo, Darnhofer Barbara, Kljajic Marko, Liesinger Laura, Schittmayer Matthias, Neshchadin Dmytro, Gescheidt Georg, Kollau Alexander, Mayer Bernd, Fischer Roland C, Wallner Silvia, Macheroux Peter, Birner-Gruenberger Ruth, Breinbauer Rolf
机构信息
Institute of Organic Chemistry, Graz University of Technology Stremayrgasse 9 8010 Graz Austria
Diagnostic and Research Institute of Pathology, Medical University of Graz Stiftingtalstraße 6 8036 Graz Austria.
出版信息
Chem Sci. 2025 Mar 11;16(15):6240-6256. doi: 10.1039/d4sc08454c. eCollection 2025 Apr 9.
Activity-based protein profiling (ABPP) is a unique proteomic tool for measuring the activity of enzymes in their cellular context, which has been well established for enzyme classes exhibiting a characteristic nucleophilic residue (, hydrolases). In contrast, the enzyme class of oxidoreductases has received less attention, as its members rely mainly on cofactors instead of nucleophilic amino acid residues for catalysis. ABPP probes have been designed for specific oxidoreductase subclasses, which rely on the oxidative conversion of the probes into strong electrophiles. Here we describe the development of ABPP probes for the simultaneous labeling of various subclasses of oxidoreductases. The probe warheads are based on hypervalent diarylhalonium salts, which show unique reactivity as their activation proceeds a reductive mechanism resulting in aryl radicals leading to covalent labeling of liver proteins at several different amino acids in close proximity to the active sites. The redox potential of the probes can be tuned by isosteric replacement varying the halonium central atom. ABPP experiments with liver using 16 probes differing in warhead, linker, and structure revealed distinct overlapping profiles and broad substrate specificities of several probes. With their capability of multi oxidoreductase subclass labeling - including rare examples for the class of reductases - and their unique design, the herein reported probes offer new opportunities for the investigation of the "oxidoreductome" of microorganisms, plants, animal and human tissues.
基于活性的蛋白质谱分析(ABPP)是一种独特的蛋白质组学工具,用于在细胞环境中测量酶的活性,对于具有特征性亲核残基的酶类(如水解酶)而言,该技术已得到充分确立。相比之下,氧化还原酶类受到的关注较少,因为其成员主要依靠辅因子而非亲核氨基酸残基进行催化。已针对特定的氧化还原酶亚类设计了ABPP探针,这些亚类依赖于将探针氧化转化为强亲电试剂。在此,我们描述了用于同时标记氧化还原酶各种亚类的ABPP探针的开发。探针弹头基于高价二芳基卤鎓盐,其表现出独特的反应性,因为它们的活化通过还原机制进行,产生芳基自由基,导致肝脏蛋白质在活性位点附近的几个不同氨基酸处发生共价标记。探针的氧化还原电位可通过等排体取代来调节,改变卤鎓中心原子。使用在弹头、连接基和结构上不同的16种探针在肝脏上进行的ABPP实验揭示了几种探针具有明显的重叠谱和广泛的底物特异性。凭借其对多种氧化还原酶亚类进行标记的能力(包括还原酶类的罕见实例)及其独特设计,本文报道的探针为研究微生物、植物、动物和人类组织的“氧化还原组”提供了新机会。