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单细胞测序与孟德尔随机化的整合揭示了单核细胞与肝细胞癌之间新的因果途径。

Integration of single-cell sequencing and mendelian randomization reveals novel causal pathways between monocytes and hepatocellular carcinoma.

作者信息

Yu Jiang, Yu Jing, Kang Zhou, Peng Yong

机构信息

North Sichuan Medical College, No. 234 Fujiang Road, Shunqing District, Nanchong City, Postal Code: 637000, Sichuan Province, China.

Department of General Surgery, The Second Clinical Medical College, North Sichuan Medical College, Nanchong Central Hospital, No. 97, Renmin South Road, Shunqing District, Nanchong City, Postal Code: 637000, Sichuan Province, China.

出版信息

Discov Oncol. 2025 Apr 24;16(1):604. doi: 10.1007/s12672-025-02357-x.


DOI:10.1007/s12672-025-02357-x
PMID:40272662
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12021761/
Abstract

BACKGROUND: Hepatocellular carcinoma (HCC) represents one of the most prevalent malignant neoplasms worldwide, characterized by poor prognosis and low 5-year survival rates. Despite extensive research, its pathogenesis remains largely unclear. Within the tumor microenvironment (TME), monocytes play a dual role: they participate in tumor cell recognition and elimination while regulating immune responses through cytokine secretion. This study aims to investigate the association between differentially expressed genes in monocytes and HCC development. METHODS: This investigation employed single-cell transcriptomic analysis of human hepatic innate lymphoid cells (ILCs) to identify monocyte subpopulations and their cellular markers. Subsequently, two-sample Mendelian randomization (MR) analysis was conducted to examine the causal relationships between these cells, their associated genes, and HCC development. RESULTS: Through comprehensive analysis of the monocyte cluster, we identified 2338 differentially expressed genes (DEGs). MR analysis revealed 13 genes significantly associated with HCC risk: CONCLUSION: This study represents the first integration of single-cell sequencing technology with MR analysis to investigate the relationship between monocytes and HCC. Through this innovative methodological approach, we have revealed potential associations between monocyte gene expression and HCC development, providing new directions for further research on HCC prevention and treatment, as well as identifying potential therapeutic targets.

摘要

背景:肝细胞癌(HCC)是全球最常见的恶性肿瘤之一,其预后较差,5年生存率较低。尽管进行了广泛的研究,但其发病机制在很大程度上仍不清楚。在肿瘤微环境(TME)中,单核细胞发挥着双重作用:它们参与肿瘤细胞的识别和清除,同时通过细胞因子分泌调节免疫反应。本研究旨在探讨单核细胞中差异表达基因与HCC发生发展之间的关联。 方法:本研究采用对人类肝脏固有淋巴细胞(ILCs)进行单细胞转录组分析,以鉴定单核细胞亚群及其细胞标志物。随后,进行两样本孟德尔随机化(MR)分析,以检验这些细胞、其相关基因与HCC发生发展之间的因果关系。 结果:通过对单核细胞簇的综合分析,我们鉴定出2338个差异表达基因(DEGs)。MR分析揭示了13个与HCC风险显著相关的基因: 结论:本研究首次将单细胞测序技术与MR分析相结合,以研究单核细胞与HCC之间的关系。通过这种创新的方法,我们揭示了单核细胞基因表达与HCC发生发展之间的潜在关联,为HCC预防和治疗的进一步研究提供了新方向,并确定了潜在的治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/9a93a809a354/12672_2025_2357_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/7837003db526/12672_2025_2357_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/e7bfcdd9c750/12672_2025_2357_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/a3c92483d69b/12672_2025_2357_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/9b5923eac192/12672_2025_2357_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/b0a77106c439/12672_2025_2357_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/9a93a809a354/12672_2025_2357_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/7837003db526/12672_2025_2357_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/e7bfcdd9c750/12672_2025_2357_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/a3c92483d69b/12672_2025_2357_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/9b5923eac192/12672_2025_2357_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/b0a77106c439/12672_2025_2357_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/563d/12021761/9a93a809a354/12672_2025_2357_Fig6_HTML.jpg

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引用本文的文献

[1]
Mendelian randomization analysis of immune cell populations, serum metabolites and hepatocellular carcinoma risk.

Discov Oncol. 2025-7-5

本文引用的文献

[1]
Treatments of transarterial chemoembolization (TACE), stereotactic body radiotherapy (SBRT) and immunotherapy reshape the systemic tumor immune environment (STIE) in patients with unresectable hepatocellular carcinoma.

J Natl Cancer Cent. 2024-11-28

[2]
Multifaceted role of GCN2 in tumor adaptation and therapeutic targeting.

Transl Oncol. 2024-11

[3]
DRD4 promotes chemo-resistance and cancer stem cell-like phenotypes by mediating the activation of the Akt/β-catenin signaling axis in liver cancer.

Br J Cancer. 2024-10

[4]
Portal Venous and Hepatic Arterial Coefficients Predict Post-Hepatectomy Overall and Recurrence-Free Survival in Patients with Hepatocellular Carcinoma: A Retrospective Study.

J Hepatocell Carcinoma. 2024-7-9

[5]
Exploration of the core pathway of inflammatory bowel disease complicated with metabolic fatty liver and two-sample Mendelian randomization study of the causal relationships behind the disease.

Front Immunol. 2024-4-18

[6]
Radiofrequency ablation plays double role in immunosuppression and activation of PBMCs in recurrent hepatocellular carcinoma.

Front Immunol. 2024

[7]
Engagement of CD300c by a novel monoclonal antibody induces the differentiation of monocytes to M1 macrophages.

Immunobiology. 2024-1

[8]
A longitudinal genome-wide association study of bone mineral density mean and variability in the UK Biobank.

Osteoporos Int. 2023-11

[9]
g:Profiler-interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update).

Nucleic Acids Res. 2023-7-5

[10]
Associations between polyunsaturated fatty acid concentrations and Parkinson's disease: A two-sample Mendelian randomization study.

Front Aging Neurosci. 2023-2-22

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