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通过计算机搜索揭示的mRNA前体的剪接位点信号。位点特异性诱变与地中海贫血。

Splice-site signals of mRNA precursors as revealed by computer search. Site-specific mutagenesis and thalassemia.

作者信息

Iida Y

出版信息

J Biochem. 1985 Apr;97(4):1173-9. doi: 10.1093/oxfordjournals.jbchem.a135162.

DOI:10.1093/oxfordjournals.jbchem.a135162
PMID:4030720
Abstract

Many eukaryotic genes are interrupted by introns, which are removed from mRNA precursors by the RNA splicing mechanism. Although nucleotide sequences around splice sites have considerable homology among various genes, exact splice-site signals are unknown. Previously, applying the computer searching method to primary nucleotide sequences of various genes, we studied what kinds of patterns are the necessary and sufficient sequences for recognition of the 5'-slice site (donor site). We proposed that four common patterns, AG/GTA, /GTAAGT, RG/GTGAG, and AG/GTXXGT, where R = A or G and X = A, T, G, or C, are often used as such signals. In the present paper, we examined a number of experimental results on site-specific mutagenesis around donor sites and on alpha- and beta-thalassemia in globin genes, and found that the above four common patterns could explain almost all of those results.

摘要

许多真核基因被内含子打断,这些内含子通过RNA剪接机制从mRNA前体中去除。尽管不同基因的剪接位点周围的核苷酸序列具有相当高的同源性,但确切的剪接位点信号尚不清楚。以前,我们将计算机搜索方法应用于各种基因的初级核苷酸序列,研究了哪些模式是识别5'剪接位点(供体位点)的必要和充分序列。我们提出,四种常见模式AG/GTA、/GTAAGT、RG/GTGAG和AG/GTXXGT(其中R = A或G,X = A、T、G或C)常被用作此类信号。在本文中,我们研究了许多关于供体位点周围位点特异性诱变以及珠蛋白基因中α和β地中海贫血的实验结果,发现上述四种常见模式几乎可以解释所有这些结果。

相似文献

1
Splice-site signals of mRNA precursors as revealed by computer search. Site-specific mutagenesis and thalassemia.通过计算机搜索揭示的mRNA前体的剪接位点信号。位点特异性诱变与地中海贫血。
J Biochem. 1985 Apr;97(4):1173-9. doi: 10.1093/oxfordjournals.jbchem.a135162.
2
Intron sequences involved in lariat formation during pre-mRNA splicing.前体mRNA剪接过程中参与套索形成的内含子序列。
Cell. 1985 May;41(1):95-105. doi: 10.1016/0092-8674(85)90064-9.
3
Quantification analysis of 5'-splice signal sequences in mRNA precursors. Mutations in 5'-splice signal sequence of human beta-globin gene and beta-thalassemia.
J Theor Biol. 1990 Aug 23;145(4):523-33. doi: 10.1016/s0022-5193(05)80486-2.
4
Recognition patterns for exon-intron junctions in higher organisms as revealed by a computer search.通过计算机搜索揭示的高等生物中外显子-内含子连接的识别模式。
J Biochem. 1983 Dec;94(6):1731-8. doi: 10.1093/oxfordjournals.jbchem.a134524.
5
Quantification analysis of 5'-splice signal sequences in mRNA precursors. Mutations in rabbit beta-globin gene.mRNA前体中5'-剪接信号序列的定量分析。兔β-珠蛋白基因中的突变。
Biochim Biophys Acta. 1989 Apr 12;1007(3):270-6. doi: 10.1016/0167-4781(89)90147-4.
6
The role of nucleotide sequences in splice site selection in eukaryotic pre-messenger RNA.核苷酸序列在真核生物前体信使RNA剪接位点选择中的作用。
Nature. 1986;324(6094):280-2. doi: 10.1038/324280a0.
7
Quantification analysis of splice signal sequences. Exon skipping in beta-globin gene of thalassemia.剪接信号序列的定量分析。地中海贫血β-珠蛋白基因中的外显子跳跃。
Nucleic Acids Symp Ser. 1993(29):161-2.
8
5' cleavage site in eukaryotic pre-mRNA splicing is determined by the overall 5' splice region, not by the conserved 5' GU.真核生物前体mRNA剪接中的5'切割位点由整个5'剪接区域决定,而非保守的5'GU。
Cell. 1987 Jul 17;50(2):237-46. doi: 10.1016/0092-8674(87)90219-4.
9
Sequence requirements for splicing of higher eukaryotic nuclear pre-mRNA.高等真核生物细胞核前体mRNA剪接的序列要求。
Cell. 1986 Nov 21;47(4):555-65. doi: 10.1016/0092-8674(86)90620-3.
10
Quantification analysis of splice signal sequences: mutation of 3'-splice signal sequence and mechanism of unsplicing in a beta-thalassemia pre-mRNA.剪接信号序列的定量分析:β地中海贫血前体mRNA中3'剪接信号序列的突变与未剪接机制
Nucleic Acids Symp Ser. 1999(42):63-4.

引用本文的文献

1
A simple physical model predicts small exon length variations.一个简单的物理模型预测外显子长度存在微小变化。
PLoS Genet. 2006 Apr;2(4):e45. doi: 10.1371/journal.pgen.0020045. Epub 2006 Apr 28.
2
RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression.不同类真核生物的RNA剪接连接:序列统计及其在基因表达中的功能意义
Nucleic Acids Res. 1987 Sep 11;15(17):7155-74. doi: 10.1093/nar/15.17.7155.
3
Computer prediction of the exon-intron structure of mammalian pre-mRNAs.哺乳动物前体信使核糖核酸外显子-内含子结构的计算机预测。
Nucleic Acids Res. 1990 Oct 11;18(19):5865-9. doi: 10.1093/nar/18.19.5865.