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基于雌二醇调节的miRNA与mRNA共表达网络鉴定子宫内膜样腺癌的预后生物标志物

Identification of prognostic biomarkers for endometrioid endometrial carcinoma based on the miRNA and mRNA co-expression network regulated by estradiol.

作者信息

Xie Qiu, Huang Junting, Xie Yuan, Hu Jin, Jin Li

机构信息

Department of Medical Research Center, State Key Laboratory for Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, PR China.

National Clinical Research Center for Obstetric and Gynecologic Diseases, Department of Obstetrics and Gynecology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College, PR China.

出版信息

Clinics (Sao Paulo). 2025 May 3;80:100672. doi: 10.1016/j.clinsp.2025.100672. eCollection 2025.

Abstract

BACKGROUND

Endometrioid Endometrial Carcinoma (EEC), an estradiol-related disease, remains a serious health threat to women because of its high incidence and trend of rejuvenation. Accumulating evidence has highlighted that microRNAs (miRNAs) and messenger RNAs (mRNAs) play important roles in various biological processes involved in the pathogenesis of EEC. This study aimed to identify the potential prognostic biomarkers associated with EEC regulated by estradiol.

METHODS

RNA expression profiles of EEC were obtained from The Cancer Genome Atlas database (n = 408) and the original sequencing, which was performed on endometrial cancer Ishikawa cells treated with 250 nM estradiol (n = 3), 50 nM estradiol (n = 3) or control (n = 3). The TargetScan database was used to predict the target genes of prognosis-related differentially expressed miRNAs (DEMs). Subsequently, functional enrichment analysis and topological analysis were performed on the overlaps of target genes and differentially expressed mRNAs (DEGs). Kaplan-Meier analysis was used to predict prognosis-related target genes to identify prognostic biomarkers and cell population landscapes, and gene expression analysis was performed to locate prognosis-related DEGs based on single-cell transcriptomic sequencing data from the NCBI Sequence Read Archive database.

RESULTS

Four estradiol-related DEGs were associated with prognosis, and 235 overlapping target DEGs were screened and incorporated into the functional enrichment analysis and protein-protein interaction network visualization studies. Additionally, SACS and GPR157 were identified as potential biomarkers for EEC prognosis through survival analyses. Furthermore, single-cell transcriptome data were analyzed to show changes in gene expression levels in specific cell types.

CONCLUSIONS

This study demonstrates that miR-142-5p-SACS and miR-30a-5p-GPR157, which are regulated by estradiol, may hold promise as diagnostic and prognostic biomarkers and novel therapeutic targets for EEC.

摘要

背景

子宫内膜样腺癌(EEC)是一种与雌二醇相关的疾病,因其高发病率和年轻化趋势,仍然对女性健康构成严重威胁。越来越多的证据表明,微小RNA(miRNA)和信使RNA(mRNA)在EEC发病机制涉及的各种生物学过程中发挥重要作用。本研究旨在鉴定受雌二醇调控的与EEC相关的潜在预后生物标志物。

方法

从癌症基因组图谱数据库(n = 408)和原始测序中获取EEC的RNA表达谱,原始测序是对用250 nM雌二醇处理的子宫内膜癌Ishikawa细胞(n = 3)、50 nM雌二醇处理的细胞(n = 3)或对照细胞(n = 3)进行的。使用TargetScan数据库预测与预后相关的差异表达miRNA(DEM)的靶基因。随后,对靶基因和差异表达mRNA(DEG)的重叠部分进行功能富集分析和拓扑分析。采用Kaplan-Meier分析预测与预后相关的靶基因,以鉴定预后生物标志物和细胞群体景观,并基于来自NCBI序列读取存档数据库的单细胞转录组测序数据进行基因表达分析,以定位与预后相关的DEG。

结果

四个与雌二醇相关的DEG与预后相关,筛选出235个重叠的靶DEG,并将其纳入功能富集分析和蛋白质-蛋白质相互作用网络可视化研究。此外,通过生存分析确定SACS和GPR157为EEC预后的潜在生物标志物。此外,对单细胞转录组数据进行分析,以显示特定细胞类型中基因表达水平的变化。

结论

本研究表明,受雌二醇调控的miR-142-5p-SACS和miR-30a-5p-GPR157有望作为EEC的诊断和预后生物标志物以及新的治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b73/12098172/603041f0bea1/gr1.jpg

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