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在模仿严重联合免疫缺陷(SCID)表型的ATM基因中鉴定无义变异:简要报告。

Identification of nonsense variants in the ATM gene mimicking SCID phenotype: a brief report.

作者信息

Firtina Sinem, Saritas Merve, Ng Yuk Yin, Nepesov Serdar, Kiykim Ayca, Bozkurt Selcen, Bilgic-Eltan Sevgi, Ng Ozden Hatirnaz, Sayitoglu Muge

机构信息

Department of Medical Genetics, Istanbul University-Cerrahpasa, Cerrahpasa Faculty of Medicine, Istanbul, Turkey.

Department of Genetics, Aziz Sancar Institute of Experimental Medicine, Istanbul University, Vakıf Gureba Cad. No:69, Fatih, Istanbul, 34093, Turkey.

出版信息

Immunol Res. 2025 May 16;73(1):82. doi: 10.1007/s12026-025-09638-1.

DOI:10.1007/s12026-025-09638-1
PMID:40379838
Abstract

Severe combined immunodeficiency (SCID) represents a life-threatening inborn error of immunity, necessitating rapid diagnosis and intervention to prevent fatal outcomes. While SCID is characterized by profound T-cell lymphopenia, it may overlap with other conditions like ataxia-telangiectasia (AT), which also presents with T-cell deficiencies. This study examines two cases of suspected SCID in infants, later identified as AT due to pathogenic variants in the ATM gene. Despite initial negative results from SCID-targeted gene panels, further genetic testing revealed nonsense mutations (p.Y2036X and p.E1996X) in the FAT domain of the ATM gene, confirmed by Sanger sequencing. The patients exhibited significant T-cell lymphopenia and reduced ATM protein activity, indicative of AT. These findings highlight the importance of comprehensive genetic screening beyond common SCID-associated genes, especially in patients with atypical presentations. Early and accurate diagnosis can prevent mismanagement and guide appropriate therapies, improving patient outcomes.

摘要

重症联合免疫缺陷(SCID)是一种危及生命的先天性免疫缺陷病,需要迅速诊断和干预以防止致命后果。虽然SCID的特征是严重的T细胞淋巴细胞减少,但它可能与其他疾病重叠,如共济失调毛细血管扩张症(AT),后者也表现为T细胞缺陷。本研究检查了两例疑似SCID的婴儿病例,后来由于ATM基因的致病变异而被确定为AT。尽管针对SCID的基因检测最初结果为阴性,但进一步的基因检测揭示了ATM基因FAT结构域中的无义突变(p.Y2036X和p.E1996X),经桑格测序证实。患者表现出明显的T细胞淋巴细胞减少和ATM蛋白活性降低,提示为AT。这些发现强调了除常见的SCID相关基因外进行全面基因筛查的重要性,特别是在表现不典型的患者中。早期准确的诊断可以防止管理不当并指导适当的治疗,改善患者预后。

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Identification of nonsense variants in the ATM gene mimicking SCID phenotype: a brief report.在模仿严重联合免疫缺陷(SCID)表型的ATM基因中鉴定无义变异:简要报告。
Immunol Res. 2025 May 16;73(1):82. doi: 10.1007/s12026-025-09638-1.
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本文引用的文献

1
Monogenic Common Variable Immunodeficiency (Mo-CVID) Score for Optimizing the Genetic Diagnosis in Pediatric CVID Cohort.用于优化儿童常见变异型免疫缺陷(CVID)队列基因诊断的单基因常见变异型免疫缺陷(Mo-CVID)评分
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Natural history of infants with non-SCID T cell lymphopenia identified on newborn screen.新生儿筛查中发现的非 SCID T 细胞减少症婴儿的自然史。
Clin Immunol. 2022 Dec;245:109182. doi: 10.1016/j.clim.2022.109182. Epub 2022 Nov 8.
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Determining T and B Cell development by TREC/KREC analysis in primary immunodeficiency patients and healthy controls.
通过 TRECs/KRECs 分析确定原发性免疫缺陷患者和健康对照者的 T 细胞和 B 细胞发育情况。
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TREC/KREC levels in children with ataxia-telangiectasia.共济失调毛细血管扩张症患儿的TREC/KREC水平
Immunol Res. 2021 Oct;69(5):436-444. doi: 10.1007/s12026-021-09216-1. Epub 2021 Aug 24.
5
Reference values for T and B lymphocyte subpopulations in Turkish children and adults.土耳其儿童和成人 T 及 B 淋巴细胞亚群参考值。
Turk J Med Sci. 2021 Aug 30;51(4):1814-1824. doi: 10.3906/sag-2010-176.
6
SCID newborn screening: What we've learned.SCID 新生儿筛查:我们所学到的。
J Allergy Clin Immunol. 2021 Feb;147(2):417-426. doi: 10.1016/j.jaci.2020.10.020.
7
Parents of ataxia-telangiectasia patients display a distinct cellular immune phenotype mimicking ATM-mutated patients.共济失调毛细血管扩张症患者的父母表现出一种独特的细胞免疫表型,类似于ATM基因突变的患者。
Pediatr Allergy Immunol. 2021 Feb;32(2):349-357. doi: 10.1111/pai.13387. Epub 2020 Oct 19.
8
Mutational landscape of severe combined immunodeficiency patients from Turkey.土耳其严重联合免疫缺陷患者的突变景观。
Int J Immunogenet. 2020 Dec;47(6):529-538. doi: 10.1111/iji.12496. Epub 2020 May 22.
9
The case for severe combined immunodeficiency (SCID) and T cell lymphopenia newborn screening: saving lives…one at a time.重症联合免疫缺陷(SCID)和 T 细胞淋巴细胞减少症新生儿筛查的理由:一次拯救一条生命……
Immunol Res. 2020 Feb;68(1):48-53. doi: 10.1007/s12026-020-09117-9.
10
Newborn Screening for Primary Immunodeficiencies: The Gaps, Challenges, and Outlook for Developing Countries.新生儿原发性免疫缺陷病筛查:发展中国家的差距、挑战和展望。
Front Immunol. 2020 Jan 30;10:2987. doi: 10.3389/fimmu.2019.02987. eCollection 2019.