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整合机器学习与分子对接以解析黄曲霉毒素B1诱导的肝细胞癌分子网络。

Integrating machine learning and molecular docking to decipher the molecular network of aflatoxin B1-induced hepatocellular carcinoma.

作者信息

Gao Junjie, Zhang Meijun, Chen Qun, Ye Kai, Wu Jing, Wang Tao, Zhang Puhong, Feng Gang

机构信息

Department of Clinical Laboratory, The Second Affiliated Hospital of Wannan Medical College, Wuhu, China.

Department of Critical Care Medicine, The First Affiliated Hospital of Wannan Medical College (Yijishan Hospital of Wannan Medical College); Anhui Province Clinical Research Center for Critical Respiratory Medicine, Anhui, PR China.

出版信息

Int J Surg. 2025 Jul 1;111(7):4539-4549. doi: 10.1097/JS9.0000000000002455. Epub 2025 May 20.

Abstract

OBJECTIVE

This study aims to investigate the molecular mechanisms underlying hepatocellular carcinoma (HCC) induced by Aflatoxin B1 (AFB1).

METHODS

Differential expression analysis of multiple datasets was performed to identify HCC-related target genes. Machine learning algorithms, network toxicology, and molecular docking techniques were integrated to explore the binding interactions between AFB1 and target proteins.

RESULTS

A total of 48 genes were identified as potential targets for AFB1-induced hepatocarcinogenesis. Subsequent machine learning analysis prioritized six core genes (RND3, PCK1, AURKA, BCAT2, UCK2, and CCNB1) as key regulators. Among these, RND3 and PCK1 exhibited significant downregulation, while AURKA, BCAT2, UCK2 and CCNB1 showed marked upregulation (P < 0.05). Molecular docking simulations revealed strong binding specificity between AFB1 and target proteins.

CONCLUSION

This study demonstrates that AFB1 may promote HCC pathogenesis by targeting specific genes and signaling pathways. Machine learning identified six core regulatory genes, and molecular docking confirmed AFB1's high binding affinity with key targets. These findings provide critical insights for further mechanistic exploration of AFB1-induced hepatocarcinogenesis.

摘要

目的

本研究旨在探究黄曲霉毒素B1(AFB1)诱发肝细胞癌(HCC)的分子机制。

方法

对多个数据集进行差异表达分析,以识别与HCC相关的靶基因。整合机器学习算法、网络毒理学和分子对接技术,探索AFB1与靶蛋白之间的结合相互作用。

结果

共鉴定出48个基因作为AFB1诱导肝癌发生的潜在靶点。随后的机器学习分析将6个核心基因(RND3、PCK1、AURKA、BCAT2、UCK2和CCNB1)列为关键调节因子。其中,RND3和PCK1表现出显著下调,而AURKA、BCAT2、UCK2和CCNB1则呈现明显上调(P < 0.05)。分子对接模拟揭示了AFB1与靶蛋白之间具有很强的结合特异性。

结论

本研究表明,AFB1可能通过靶向特定基因和信号通路促进HCC发病机制。机器学习识别出6个核心调控基因,分子对接证实了AFB1与关键靶点具有高结合亲和力。这些发现为进一步深入探究AFB1诱导肝癌发生的机制提供了重要见解。

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