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通过小角X射线散射和分子动力学模拟深入了解间皮肌动蛋白结合尾域的溶液结构

Insights into the solution structure of the actin-binding tail domain of metavinculin by small angle X-ray scattering and molecular dynamics simulations.

作者信息

Oztug Durer Zeynep Aslihan, İnce Hande İpek, Duvenci Zeynep Sevval, Timucin Emel, Gräwert Tobias, Orun Oya, Kan Beki, Sayers Zehra

机构信息

School of Medicine, Department of Biophysics, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey; Faculty of Pharmacy, Department of Biochemistry, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.

Institute of Health Sciences, Department of Biophysics, Marmara University, Istanbul, Turkey.

出版信息

Int J Biol Macromol. 2025 Aug;319(Pt 3):144376. doi: 10.1016/j.ijbiomac.2025.144376. Epub 2025 May 21.

Abstract

Vinculin is a ubiquitously expressed focal adhesion protein that plays an important role in cell-matrix and cell-to-cell junctions. Metavinculin, a muscle-specific splice variant of vinculin, contains a 68-amino acid disordered insert region in its actin binding tail domain (MVt). Mutations in this insert are linked to cardiomyopathies. This study investigates the solution structures and structural ensembles of wild-type (WT) and two mutant MVts, ΔLeu954 and R975W, which have been associated with cardiomyopathies, using small-angle X-ray scattering (SAXS) and molecular dynamics (MD) simulations. SAXS analyses revealed subtle differences in the estimated maximum dimensions and corroborated the elongated shape of the MVts. Quantitative comparisons of SAXS profiles indicated similarity between the WT and ΔLeu954, whereas R975W exhibited differences in the small-angle region. MD simulations demonstrated reduced conformational flexibility and greater packing of the insert in WT compared to mutants. Notably, a salt-bridge observed between R975 and D907 in a WT simulation provides a structural basis for the destabilization caused by the R975W mutation. These findings provide insights into the structure and dynamics of WT and mutant MVt, reflecting the promise of SAXS combined with MD simulations to elucidate the structural properties of proteins with structural disorder.

摘要

纽蛋白是一种广泛表达的粘着斑蛋白,在细胞与基质以及细胞间连接中发挥重要作用。间纽蛋白是纽蛋白的一种肌肉特异性剪接变体,在其肌动蛋白结合尾域(MVt)中含有一个68个氨基酸的无序插入区域。该插入区域的突变与心肌病有关。本研究使用小角X射线散射(SAXS)和分子动力学(MD)模拟,研究了野生型(WT)以及与心肌病相关的两种突变体MVt(ΔLeu954和R975W)的溶液结构和结构集合。SAXS分析揭示了估计的最大尺寸存在细微差异,并证实了MVt呈细长形状。SAXS图谱的定量比较表明WT和ΔLeu954之间具有相似性,而R975W在小角区域表现出差异。MD模拟表明,与突变体相比,WT中插入区域的构象灵活性降低且堆积更紧密。值得注意的是,在WT模拟中观察到R975和D907之间形成了一个盐桥,这为R975W突变导致的不稳定提供了结构基础。这些发现为WT和突变体MVt的结构和动力学提供了见解,反映了SAXS与MD模拟相结合在阐明具有结构无序的蛋白质结构特性方面的前景。

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