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IFT140功能丧失变体在肾囊肿发生中的临床相关性

Clinical Relevance of IFT140 Loss-of-Function Variants in Development of Renal Cysts.

作者信息

Cristalli Carlotta Pia, Calabrese Sara, Caramanna Luca, Pietra Andrea, Vitetta Giulia, De Nicolo Bianca, Bonora Elena, Severi Giulia, Menabò Soara, Ferrari Simona, Ciurli Francesca, Aiello Valeria, Capelli Irene, Pasini Andrea, Alberici Irene, Pillon Roberto, La Scola Claudio, Rossi Cesare, Montanari Francesca, Graziano Claudio

机构信息

IRCCS, Azienda Ospedaliero-Universitaria di Bologna, 40138 Bologna, Italy.

Department of Medical and Surgical Sciences (DIMEC), University of Bologna, 40138 Bologna, Italy.

出版信息

Genes (Basel). 2025 Apr 22;16(5):472. doi: 10.3390/genes16050472.

Abstract

BACKGROUND

Autosomal dominant polycystic kidney disease (ADPKD) is the most common inherited kidney disease, affecting approximately 1 in 1000 individuals. This genetically heterogeneous condition is primarily caused by monoallelic pathogenic or likely pathogenic variants in the and genes, accounting for 78% and 15% of typical cases, respectively. Recently, the application of NGS methods has led to the identification of additional genes associated with ADPKD, which have been incorporated into routine diagnostic testing for detecting phenocopies of the disease.

METHODS

In this study, targeted NGS (tNGS) analysis of the main cystogenes associated with classic and atypical ADPKD was performed in a cohort of 218 patients clinically diagnosed with cystic nephropathies.

RESULTS

Genetic testing identified variants in 175 out of 218 cases (80.3%). Among these, 133 probands (76%) harbored likely pathogenic or pathogenic variants in one or more genes of the panel, while 42 individuals (24%) had a variant of unknown significance (VUS). Specifically, one or more class 4/5 variants in , or both were identified in 111 (83.5%) probands. Remarkably, a pathogenic variant in the gene was identified in 14 index cases (8% of positive individuals, 6.4% of the global cohort): 10 distinct loss-of-function (LoF) variants were identified (including four frameshift variants, four nonsense variants, and two splice site defects); one individual carried a second missense variant classified as VUS. Furthermore, five affected family members were found to carry a P/LP LoF variant in .

CONCLUSIONS

Our data support that heterozygous LoF variants result in an atypical, mild form of ADPKD, consisting of bilateral kidney cysts and renal functional decline at older ages. Furthermore, we describe the second pediatric patient with a mild form of ADPKD due to an variant and discuss hyperuricemia as a previously unappreciated feature of this condition.

摘要

背景

常染色体显性多囊肾病(ADPKD)是最常见的遗传性肾病,每1000人中约有1人受影响。这种基因异质性疾病主要由PKD1和PKD2基因中的单等位基因致病性或可能致病性变异引起,分别占典型病例的78%和15%。最近,二代测序(NGS)方法的应用导致了与ADPKD相关的其他基因的鉴定,这些基因已被纳入用于检测该疾病表型模拟的常规诊断测试中。

方法

在这项研究中,对218例临床诊断为囊性肾病的患者进行了与经典和非典型ADPKD相关的主要致病基因的靶向二代测序(tNGS)分析。

结果

基因检测在218例病例中的175例(80.3%)中发现了变异。其中,133例先证者(76%)在检测组的一个或多个基因中携带可能致病性或致病性变异,而42例个体(24%)有意义未明的变异(VUS)。具体而言,111例(83.5%)先证者中鉴定出PKD1或PKD2中一个或多个4/5类变异。值得注意的是,在14例索引病例中鉴定出PKD2基因中的致病性变异(占阳性个体的8%,占整个队列的6.4%):鉴定出10种不同的功能丧失(LoF)变异(包括4种移码变异、4种无义变异和2种剪接位点缺陷);1例个体携带另一种分类为VUS的PKD2错义变异。此外,发现5名受影响的家庭成员在PKD2中携带P/LP LoF变异。

结论

我们的数据支持PKD2杂合LoF变异导致非典型、轻度形式的ADPKD,表现为双侧肾囊肿和老年时肾功能下降。此外,我们描述了第二例因PKD2变异导致轻度ADPKD的儿科患者,并讨论了高尿酸血症作为这种疾病以前未被认识的特征。

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