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一种基于转录组的人类通用衰老指数(hUSI)能够在各种条件下可靠地预测细胞衰老。

A transcriptome-based human universal senescence index (hUSI) robustly predicts cellular senescence under various conditions.

作者信息

Wang Jing, Zhou Xiaolan, Yu Peng, Yao Jun, Guo Pengfei, Xu Qiushi, Zhao Yuqi, Wang Guanlong, Li Qianru, Zhu Xiaofeng, Wei Gang, Wang Weixu, Ni Ting

机构信息

State Key Laboratory of Genetics and Development of Complex Phenotypes, National Clinical Research Center for Aging and Medicine, Huashan Hospital, Collaborative Innovation Center of Genetics and Development, Human Phenome Institute, Center for Evolutionary Biology, Shanghai Engineering Research Center of Industrial Microorganisms, School of Life Sciences, Fudan University, Shanghai, China.

Department of Cardiology, Zhongshan Hospital, Fudan University, Shanghai Institute of Cardiovascular Diseases, Shanghai, China.

出版信息

Nat Aging. 2025 May 29. doi: 10.1038/s43587-025-00886-2.

Abstract

Despite the manifestation and contribution of cellular senescence to aging and various diseases, accurate identification of heterogeneous senescent cells remains challenging. Current senescence evaluation methods rely mainly on limited markers or homogeneous samples, which might fail to capture universal senescence features, limiting their generalizability. Here we developed the human universal senescence index (hUSI), an accurate and robust senescence evaluation method for diverse cells and samples. Based on features learned from the most comprehensive cellular senescence-associated transcriptome data so far, hUSI demonstrated its convincing connections with senescence phenotypes and superior robustness in predicting senescence state. Using hUSI, we discovered potential senescence regulators and mapped senescent cell accumulation across cell types in coronavirus disease 2019 (COVID-19). The method also facilitates decoding heterogeneous senescence states in melanoma tumors, identifying prognosis-associated signaling pathways. Overall, hUSI demonstrates its utility in characterizing cellular senescence across biological contexts, with broad applications in aging research and clinical practice.

摘要

尽管细胞衰老对衰老和各种疾病有表现和贡献,但准确识别异质性衰老细胞仍然具有挑战性。当前的衰老评估方法主要依赖于有限的标志物或均一样本,这可能无法捕捉到普遍的衰老特征,限制了它们的通用性。在这里,我们开发了人类通用衰老指数(hUSI),这是一种用于多种细胞和样本的准确且稳健的衰老评估方法。基于从迄今为止最全面的细胞衰老相关转录组数据中学到的特征,hUSI证明了其与衰老表型的令人信服的联系以及在预测衰老状态方面的卓越稳健性。使用hUSI,我们发现了潜在的衰老调节因子,并绘制了2019冠状病毒病(COVID-19)中不同细胞类型的衰老细胞积累情况。该方法还有助于解码黑色素瘤肿瘤中的异质性衰老状态,识别与预后相关的信号通路。总体而言,hUSI展示了其在跨生物学背景表征细胞衰老方面的实用性,在衰老研究和临床实践中有广泛应用。

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