Bertocci Barbara, Yilmaz Ayse, Waeckel-Énée Emmanuelle, Guerrera Chiara, Roger Kevin, Touré Lamine, van Endert Peter M
Université Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, F-75015 Paris, France.
Université Paris Cité, INSERM, CNRS, Structure Fédérative de Recherche Necker, Proteomics Platform, F-75015 Paris, France.
Cells. 2025 May 28;14(11):792. doi: 10.3390/cells14110792.
Insulin-degrading enzyme is a zinc metalloprotease that degrades low-molecular-weight substrates, including insulin. Ubiquitous expression, high evolutionary conservation, upregulation of Ide in stress situations, and literature findings suggest a broader function of Ide in cell physiology and protein homeostasis that remains to be elucidated. We used proteomics and transcriptomics approaches to search for leads related to a broader role of Ide in protein homeostasis. We combined an analysis of the proteome and single-cell transcriptome of and pancreatic islet cells with an examination of the interactome of human cytosolic Ide using proximity biotinylation. We observe an upregulation of pathways related to RNA processing, translation and splicing in relative to islet cells. Corroborating these results and providing a potential mechanistic explanation, proximity biotinylation reveals interaction of Ide with several subunits of CCR4-NOT, a key mRNA deadenylase regulating gene expression "from birth to death". We propose a speculative model in which human and murine Ide cooperate with CCR4-NOT to control protein expression in proteotoxic and metabolic stress situations through cooperation between their deadenylase and protease functions.
胰岛素降解酶是一种锌金属蛋白酶,可降解包括胰岛素在内的低分子量底物。其广泛表达、高度的进化保守性、在应激情况下Ide的上调以及文献研究结果表明,Ide在细胞生理学和蛋白质稳态中具有更广泛的功能,尚待阐明。我们使用蛋白质组学和转录组学方法来寻找与Ide在蛋白质稳态中更广泛作用相关的线索。我们将对人和小鼠胰岛细胞的蛋白质组和单细胞转录组分析与使用邻近生物素化技术对人细胞质Ide相互作用组的研究相结合。我们观察到相对于小鼠胰岛细胞,人胰岛细胞中与RNA加工、翻译和剪接相关的通路上调。邻近生物素化技术证实了这些结果,并提供了一个潜在的机制解释,该技术揭示了Ide与CCR4-NOT的几个亚基相互作用,CCR4-NOT是一种关键的mRNA去腺苷酸化酶,可“从生到死”调节基因表达。我们提出了一个推测性模型,即人和小鼠的Ide与CCR4-NOT合作,通过它们的去腺苷酸化酶和蛋白酶功能之间的协同作用,在蛋白质毒性和代谢应激情况下控制蛋白质表达。