胃癌患者程序性细胞死亡模式相关基因的预后及药物敏感性综合分析
Comprehensive analysis of prognosis and drug sensitivity of programmed cell death pattern-related genes in gastric cancer patients.
作者信息
Qu Huiheng, Zhou Peng, Yang Zhihui, Wang Hao, Deng Kaiyuan, Wang Nan, Li Yuyang, Zhao Yupeng, Chen Yigang, Yang Qian, Xia Jiazeng
机构信息
Department of General Surgery, Wuxi No. 2 People's Hospital, Institute of General Surgery, Jiangnan University Medical Center, Jiangnan University, Wuxi City, 214002, People's Republic of China.
Wuxi Clinical College, Nantong University, Wuxi City, 214002, People's Republic of China.
出版信息
Sci Rep. 2025 Jul 2;15(1):22535. doi: 10.1038/s41598-025-06424-9.
Currently, effective prediction models for patients with advanced and postoperative gastric cancer (GC) are lacking. Programmed cell death (PCD) plays a crucial role in the development and metastasis of malignant tumors. This study aimed to investigate the underlying PCD-related molecular mechanisms and develop predictive models for GC. GC profiles were collected from TCGA-STAD, GSE84433, GSE62254, and GSE183904 databases. Differential expression analysis was conducted to identify PCD-related genes (differentially expressed genes (DEGs)), which were then subjected to functional analyses. Cox proportional hazards analyses were used to select PCD-related prognostic DEGs, and a cell death index (CDI) model was proposed. The performance of this model, tumor molecular subtypes, and the tumor microenvironment were assessed. Additionally, drug sensitivity and immune checkpoint expression were examined based on the CDI model. A total of 345 PCD-related DEGs were identified, enriched in processes such as autophagy, apoptosis, necroptosis, ferroptosis, and signaling pathways including p53, NOD-like receptor, IL-17, NF-kappa B, and PI3K-Akt. Subsequently, a CDI model comprising 17 PCD-related prognostic DEGs was constructed, demonstrating superior predictive capability. GC samples were classified into three distinct clustering subtypes, with cluster 1 exhibiting the best overall survival, followed by cluster 3 and cluster 2. Eight immune cell types were significantly associated with the CDI risk score. Furthermore, the CDI risk score exhibited positive correlations with most drugs (except for BMS.754807). Additionally, the expression of immune checkpoint genes PDCD1, CD274, and IDO1 was notably upregulated in the low-risk CDI group. Our developed CDI model, based on 17 PCD-associated prognostic genes, can be employed for risk assessment and prognosis prediction in patients with GC.
目前,缺乏针对晚期和术后胃癌(GC)患者的有效预测模型。程序性细胞死亡(PCD)在恶性肿瘤的发生和转移中起关键作用。本研究旨在探讨潜在的PCD相关分子机制,并开发GC的预测模型。从TCGA-STAD、GSE84433、GSE62254和GSE183904数据库收集GC数据。进行差异表达分析以鉴定PCD相关基因(差异表达基因(DEGs)),然后对其进行功能分析。使用Cox比例风险分析来选择PCD相关的预后DEGs,并提出了细胞死亡指数(CDI)模型。评估了该模型的性能、肿瘤分子亚型和肿瘤微环境。此外,基于CDI模型检测了药物敏感性和免疫检查点表达。共鉴定出345个PCD相关的DEGs,富集于自噬、凋亡、坏死性凋亡、铁死亡等过程以及p53、NOD样受体、IL-17、NF-κB和PI3K-Akt等信号通路。随后,构建了一个包含17个PCD相关预后DEGs的CDI模型,显示出卓越的预测能力。GC样本被分为三种不同的聚类亚型,其中聚类1的总生存率最佳,其次是聚类3和聚类2。八种免疫细胞类型与CDI风险评分显著相关。此外,CDI风险评分与大多数药物呈正相关(除了BMS.754807)。此外,免疫检查点基因PDCD1、CD274和IDO1的表达在低风险CDI组中显著上调。我们基于17个与PCD相关的预后基因开发的CDI模型可用于GC患者的风险评估和预后预测。