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基于转录组和单细胞测序分析的皮肤黑色素瘤新型坏死性凋亡相关预后特征

A novel necroptosis related prognostic signature for skin cutaneous melanoma based on transcriptome and single cell sequencing analysis.

作者信息

Fan Xin, Lu Lingyi, Wang Sihan, Zhou Qiongyan, Lin Bingjiang

机构信息

Department of Dermatology, The First Affiliated Hospital of Ningbo University, 59 Liuting Street, Ningbo, 315010, Zhejiang, China.

School of Medicine, Ningbo University, Ningbo, Zhejiang, China.

出版信息

Sci Rep. 2025 Jul 1;15(1):20650. doi: 10.1038/s41598-025-07829-2.


DOI:10.1038/s41598-025-07829-2
PMID:40596554
Abstract

Necroptosis is a novel programmed cell death that affects the tumor heterogeneity, microenvironment, and prognosis, which is not well elucidated in skin cutaneous melanoma (SKCM). The SKCM-TCGA, GSE65904, and GSE215120 datasets were downloaded from the TCGA and GEO databases, respectively. The necroptosis-related genes were identified by weighted co-expression network analysis (WGCNA) and single-cell sequencing analysis. COX and LASSO regression was used to construct the prognostic model. Survival analysis, immune infiltration analysis, and tumor mutation analysis between the high-necroptosis score (NCPTS) and low-NCPTS groups were performed. Finally, real-time PCR experiment was carried out to verify the results. A prognostic model based on 9 necroptosis-related genes (TUFM, CD53, CLEC2D, KLRC1, STAT4, IFI35, XCL1, TAPBP, and SOD2) was constructed to predict the prognosis of SKCM patients. The patients in high-NCPTS group had a poor prognosis. The expression of immune checkpoint-related gene and drug sensitivity were higher than those in the low-NCPTS groups, indicating susceptible for immunotherapy. Real-time PCR showed that TUFM expression was significantly higher in A375 cells than control (P < 0.05). Besides, TUFM expression was also validated by TISCH and HPA database. The prognostic model might provide guidance for the prognosis and immunotherapy for SKCM patients, contributing to a better understanding of necroptosis in SKCM.

摘要

坏死性凋亡是一种新型程序性细胞死亡,它影响肿瘤异质性、微环境和预后,而皮肤黑色素瘤(SKCM)中对此尚未有充分阐明。分别从TCGA和GEO数据库下载了SKCM-TCGA、GSE65904和GSE215120数据集。通过加权共表达网络分析(WGCNA)和单细胞测序分析鉴定坏死性凋亡相关基因。使用COX和LASSO回归构建预后模型。对高坏死性凋亡评分(NCPTS)组和低NCPTS组进行生存分析、免疫浸润分析和肿瘤突变分析。最后,进行实时PCR实验验证结果。构建了基于9个坏死性凋亡相关基因(TUFM、CD53、CLEC2D、KLRC1、STAT4、IFI35、XCL1、TAPBP和SOD2)的预后模型,以预测SKCM患者的预后。高NCPTS组患者预后较差。免疫检查点相关基因的表达和药物敏感性高于低NCPTS组,表明对免疫治疗敏感。实时PCR显示,TUFM在A375细胞中的表达明显高于对照组(P < 0.05)。此外,TUFM的表达也通过TISCH和HPA数据库得到验证。该预后模型可能为SKCM患者的预后和免疫治疗提供指导,有助于更好地理解SKCM中的坏死性凋亡。

相似文献

[1]
A novel necroptosis related prognostic signature for skin cutaneous melanoma based on transcriptome and single cell sequencing analysis.

Sci Rep. 2025-7-1

[2]
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[3]
The role and prognostic value of PANoptosis-related genes in skin cutaneous melanoma.

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[4]
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[5]
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Transl Cancer Res. 2025-5-30

[6]
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[7]
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BMC Cancer. 2025-7-1

[8]
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Br J Dermatol. 2025-1-24

[9]
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[10]
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Sci Rep. 2025-1-25

本文引用的文献

[1]
TUFM in health and disease: exploring its multifaceted roles.

Front Immunol. 2024-5-29

[2]
A review of the clinical efficacy of FDA-approved antibody‒drug conjugates in human cancers.

Mol Cancer. 2024-3-23

[3]
Immunogenic cell death in cancer: targeting necroptosis to induce antitumour immunity.

Nat Rev Cancer. 2024-5

[4]
Clinical-mediated discovery of pyroptosis in CD8 T cell and NK cell reveals melanoma heterogeneity by single-cell and bulk sequence.

Cell Death Dis. 2023-8-24

[5]
Chemotherapy in Cutaneous Melanoma: Is There Still a Role?

Curr Oncol Rep. 2023-6

[6]
Comprehensive Analysis of Necroptosis Landscape in Skin Cutaneous Melanoma for Appealing its Implications in Prognosis Estimation and Microenvironment Status.

J Pers Med. 2023-1-29

[7]
Cancer statistics, 2023.

CA Cancer J Clin. 2023-1

[8]
A Novel Necroptosis-Related Gene Signature in Skin Cutaneous Melanoma Prognosis and Tumor Microenvironment.

Front Genet. 2022-7-11

[9]
Development and Validation of a Novel Survival Model for Cutaneous Melanoma Based on Necroptosis-Related Genes.

Front Oncol. 2022-3-21

[10]
Pan-cancer analysis of necroptosis-related gene signature for the identification of prognosis and immune significance.

Discov Oncol. 2022-3-21

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