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谷子(Setaria italica L.)基因家族的全基因组鉴定及低磷胁迫下SiSPX1的功能表征

Genome-wide identification of gene family in foxtail millet ( L.) and functional characterization of under low phosphorus stress.

作者信息

Meng Chaomin, Guo Haojie, Wang Cheng, Yang Furong, Du Bing

机构信息

College of Agriculture, Henan University of Science and Technology, Luoyang, China.

出版信息

Front Plant Sci. 2025 Jun 18;16:1586547. doi: 10.3389/fpls.2025.1586547. eCollection 2025.

Abstract

Glycerophosphodiester phosphodiesterase (GDPD) catalyzes the hydrolysis of glycerophosphodiesters into sn-glycerol-3-phosphate (G-3-P) and corresponding alcohols, which is integral to various physiological processes in plants. However, our comprehension of the gene family in foxtail millet ( L.) remains limited and unclear. This study aimed to identify and predict the function of gene family members in foxtail millet through a comprehensive genome-wide analysis.14 genes were identified in the foxtail millet genome. Phylogenetic analysis categorized proteins into five groups. Promoter regions of genes contained multiple -acting elements related to light response, hormone regulation, and stress response. Phylogenetic and collinearity analyses demonstrated conservation of GDPD proteins among foxtail millet, sorghum, rice, and maize, with the gene family undergoing purifying selection during evolution.Tissue differential expression analysis revealed distinct expression patterns of genes across various tissues, showing spatiotemporal expression characteristics. Under low phosphorus stress, the expression levels of and significantly increased, while , , , and showed significant decreases.To identify the function of , an over-expressed transgenic was generated. The results showed that transgenic plants over-expressing exhibited enhanced tolerance to low phosphorus stress.Taken together, the results of this study provide valuable information for further studies on candidate genes involved in the phosphate deficiency response in foxtail millet.

摘要

甘油磷酸二酯磷酸二酯酶(GDPD)催化甘油磷酸二酯水解为sn-甘油-3-磷酸(G-3-P)和相应的醇类,这对植物的各种生理过程至关重要。然而,我们对谷子(Setaria italica (L.))中该基因家族的理解仍然有限且不清楚。本研究旨在通过全面的全基因组分析来鉴定和预测谷子中GDPD基因家族成员的功能。在谷子基因组中鉴定出14个GDPD基因。系统发育分析将GDPD蛋白分为五组。GDPD基因的启动子区域包含多个与光响应、激素调节和胁迫响应相关的顺式作用元件。系统发育和共线性分析表明,谷子、高粱、水稻和玉米中的GDPD蛋白具有保守性,该基因家族在进化过程中经历了纯化选择。组织差异表达分析揭示了GDPD基因在不同组织中的不同表达模式,呈现出时空表达特征。在低磷胁迫下,SiGDPD1和SiGDPD4的表达水平显著增加,而SiGDPD2、SiGDPD3、SiGDPD5和SiGDPD6则显著下降。为了鉴定SiGDPD4的功能,构建了过表达转基因植株。结果表明,过表达SiGDPD4的转基因植株对低磷胁迫表现出增强的耐受性。综上所述,本研究结果为进一步研究谷子中参与缺磷响应的候选GDPD基因提供了有价值的信息。

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