解析二陈汤治疗非酒精性脂肪性肝病(NAFLD)的机制:一项结合网络药理学、分子对接、分子动力学模拟、多组学分析和实验验证的综合研究

Unravelling the mechanisms of erchen decoction in the treatment of nonalcoholic fatty liver disease (NAFLD): an integrative study combining network pharmacology, molecular docking, molecular dynamics simulation, multi-omics analysis, and experimental validation.

作者信息

Zheng Hui, Li Hang, Du Hang, Sheng Lisong, Huang Nana, Li Xiaonan, Sun Rong

机构信息

Basic Medical Research Institute, Integrated Traditional Chinese and Western Medicine Center, The Second Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250033, China; Advanced Medical Research Institute, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250012, China.

Basic Medical Research Institute, Integrated Traditional Chinese and Western Medicine Center, The Second Hospital, Cheeloo College of Medicine, Shandong University, Jinan, Shandong 250033, China.

出版信息

J Ethnopharmacol. 2025 Jul 2;353(Pt A):120216. doi: 10.1016/j.jep.2025.120216.

Abstract

ETHNOPHARMACOLOGICAL RELEVANCE

Erchen decoction (ECD) is a traditional Chinese herbal formula widely used in clinical practice for the treatment of nonalcoholic fatty liver disease (NAFLD). However, the molecular mechanisms underlying its therapeutic effects have not been fully clarified.

AIM OF THE STUDY

To explore the pharmacological efficacy and potential molecular mechanisms of ECD in the treatment of NAFLD.

MATERIALS AND METHODS

UPLC-Q-E-Orbitrap-MS was used to identify the chemical composition of the ECD and ECD-containing serum (ECDS). Network pharmacology, molecular docking, molecular dynamics simulation, transcriptomics, and metabolomics were integrated to predict the underlying mechanisms. In vivo and in vitro models-including high-fat diet- and glucose-fructose water-fed mice, as well as oleic acid- and palmitic acid-induced HepG2 cells-were used to evaluate the therapeutic effects of ECD. An inhibition strategy was applied to investigate the functions of the validated pathways.

RESULTS

ECD attenuated NAFLD progression both in vivo and in vitro. Thirty-eight active ingredients were identified in the ECDS. Network pharmacological analysis predicted that PPARG and BCL-2 might be central targets, whereas AMPK signalling and apoptosis are likely the main pathways mediating the anti-NAFLD effects of ECD. Molecular docking and molecular dynamics simulation suggested that multiple ECDS ingredients exhibited favourable binding affinities with AMPK and BCL-2, potentially offering therapeutic effects in NAFLD treatment. RNA sequencing analysis revealed that the differentially expressed genes were enriched primarily in the AMPK pathway. Liver metabolomics analysis revealed that the differentially expressed metabolites were associated mainly with oxidative phosphorylation and AMPK signalling. In experimental validation, ECD treatment increased phosphorylated AMPK levels, thereby promoting PPARα activation and upregulating key enzymes involved in β-oxidation (CPT1A and ACOX1) while downregulating PPARγ and its downstream genes associated with fatty acid synthesis (SREBP-1 and FASN), thus improving hepatic lipid metabolism both in vivo and in vitro. Moreover, the combination of ECD with the AMPK inhibitor compound C counteracted the lipid synthesis-reducing and lipid degradation-promoting effects of ECD both in vivo and in vitro. Additionally, ECD reduced the expression of inflammatory cytokines (TNF-α, IL-6, and IL-1β), suppressed ROS production, increased the mitochondrial membrane potential, and inhibited cell apoptosis by modulating the expression of BCL-2, Bax, cleaved PARP and cleaved caspase-3 both in vivo and in vitro.

CONCLUSION

ECD attenuates NAFLD progression by targeting AMPK-mediated hepatic lipid metabolism and reducing hepatic apoptosis, providing new insights into the anti-NAFLD mechanism of ECD.

摘要

民族药理学相关性

二陈汤(ECD)是一种传统中药方剂,在临床实践中广泛用于治疗非酒精性脂肪性肝病(NAFLD)。然而,其治疗作用的分子机制尚未完全阐明。

研究目的

探讨二陈汤治疗NAFLD的药理作用及潜在分子机制。

材料与方法

采用超高效液相色谱-四极杆-静电场轨道阱质谱联用技术(UPLC-Q-E-Orbitrap-MS)鉴定二陈汤及含二陈汤血清(ECDS)的化学成分。整合网络药理学、分子对接、分子动力学模拟、转录组学和代谢组学来预测潜在机制。使用体内和体外模型,包括高脂饮食和葡萄糖-果糖水喂养的小鼠,以及油酸和棕榈酸诱导的HepG2细胞,来评估二陈汤的治疗效果。应用抑制策略研究已验证通路的功能。

结果

二陈汤在体内和体外均减轻了NAFLD的进展。在ECDS中鉴定出38种活性成分。网络药理学分析预测过氧化物酶体增殖物激活受体γ(PPARG)和B细胞淋巴瘤-2(BCL-2)可能是核心靶点,而腺苷酸活化蛋白激酶(AMPK)信号通路和细胞凋亡可能是介导二陈汤抗NAFLD作用的主要途径。分子对接和分子动力学模拟表明,多种ECDS成分与AMPK和BCL-2表现出良好的结合亲和力,可能在NAFLD治疗中发挥治疗作用。RNA测序分析显示,差异表达基因主要富集于AMPK信号通路。肝脏代谢组学分析显示,差异表达代谢物主要与氧化磷酸化和AMPK信号通路相关。在实验验证中,二陈汤治疗增加了磷酸化AMPK水平,从而促进过氧化物酶体增殖物激活受体α(PPARα)活化,上调参与β-氧化的关键酶(肉碱棕榈酰转移酶1A(CPT1A)和酰基辅酶A氧化酶1(ACOX1)),同时下调PPARγ及其与脂肪酸合成相关的下游基因(固醇调节元件结合蛋白1(SREBP-1)和脂肪酸合酶(FASN)),从而在体内和体外改善肝脏脂质代谢。此外,二陈汤与AMPK抑制剂化合物C联合使用在体内和体外均抵消了二陈汤降低脂质合成和促进脂质降解的作用。此外,二陈汤在体内和体外均通过调节BCL-2、Bax、裂解的聚(ADP-核糖)聚合酶(PARP)和裂解的半胱天冬酶-3的表达,降低炎症细胞因子(肿瘤坏死因子-α(TNF-α)、白细胞介素-6(IL-6)和白细胞介素-1β(IL-1β))的表达,抑制活性氧(ROS)产生,增加线粒体膜电位,并抑制细胞凋亡。

结论

二陈汤通过靶向AMPK介导的肝脏脂质代谢和减少肝脏细胞凋亡来减轻NAFLD的进展,为二陈汤抗NAFLD的机制提供了新的见解。

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