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印度基因独特的蜱虫病毒组的宏基因组学鉴定揭示了纯化选择以及载脂蛋白B mRNA编辑酶催化多肽样蛋白(APOBEC)和腺苷脱氨酶作用于RNA(ADAR)编辑的迹象。

Metagenomics identification of genetically distinct tick virome in India unveils signs of purifying selection, and APOBEC and ADAR editing.

作者信息

Desingu Perumal Arumugam, Arunkumar Selvarayar, Nagarajan Kumaresan, Saikumar G

机构信息

Department of Virus Epidemiology, Vector Dynamics & Public Health, Institute of Advanced Virology, Thonnakkal, Thiruvananthapuram, Kerala 695 317, India.

Department of Veterinary Parasitology, Madras Veterinary College, Tamil Nadu Veterinary and Animal Sciences University, Chennai, Tamil Nadu 600 007, India.

出版信息

iScience. 2025 Jun 11;28(7):112873. doi: 10.1016/j.isci.2025.112873. eCollection 2025 Jul 18.

Abstract

Recently, several tick-borne zoonotic viruses have been identified through the application of virus metagenomics. However, the tick virome in South Asia and the factors driving the evolution of these viruses remain largely unknown. In this study, we report the complete genomes of the genetically distinct Nairobi sheep disease virus (NSDV), Jingmen tick virus (JMTV), Lihan tick virus (LTV), and Mivirus, along with nearly complete genomes of turnip mosaic virus (TMV) and turnip yellows virus (TYV). We also present partial genomes of Tamdy orthonairovirus, Nayun tick nairoviruses (NTNV), PTV-like viruses, Xinjiang tick-associated virus-1 (XTAV1), Totivirus, Kismayo viruses, Quaranjavirus, and Brown dog tick phlebovirus-2 (BDTPV-2), identified from Indian ticks through virus metagenomics. The diversity was categorized into distinct groups specific to particular host organisms and/or geographical regions. Our findings also indicated that selection pressure for codon usage in these viruses was influenced by purifying selection, which induces transition mutations potentially through apolipoprotein B mRNA editing enzyme, catalytic polypeptide (APOBEC) and adenosine deaminases acting on RNA (ADAR) editing.

摘要

最近,通过病毒宏基因组学的应用,已鉴定出几种蜱传人畜共患病毒。然而,南亚的蜱病毒组以及驱动这些病毒进化的因素在很大程度上仍不清楚。在本研究中,我们报告了基因不同的内罗毕羊病病毒(NSDV)、荆门蜱病毒(JMTV)、李汉蜱病毒(LTV)和米病毒的完整基因组,以及芜菁花叶病毒(TMV)和芜菁黄化病毒(TYV)的近乎完整的基因组。我们还展示了通过病毒宏基因组学从印度蜱中鉴定出的坦迪正布尼亚病毒、纳云蜱内罗病毒(NTNV)、类PTV病毒、新疆蜱相关病毒-1(XTAV1)、全病毒、基斯马尤病毒、夸兰贾病毒和棕狗蜱静脉病毒-2(BDTPV-2)的部分基因组。这种多样性被分类为特定于特定宿主生物和/或地理区域的不同组。我们的研究结果还表明,这些病毒密码子使用的选择压力受到纯化选择的影响,纯化选择可能通过载脂蛋白B mRNA编辑酶、催化多肽(APOBEC)和作用于RNA的腺苷脱氨酶(ADAR)编辑诱导转换突变。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7587/12226380/5b7036ef7998/fx1.jpg

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