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来自受铬污染土壤的微观世界的宏转录组揭示了微生物群落对乙酸盐刺激的代谢反应。

Meta-Transcriptomes From Microcosms From a Cr Impacted Soil Provides Insights Into the Metabolic Response of the Microbial Populations to Acetate Stimulation.

作者信息

Stewart Douglas I, Vasconcelos Elton J R, Burke Ian T, Baker Alison

机构信息

School of Civil Engineering, University of Leeds, Leeds, UK.

Leeds Omics, University of Leeds, Leeds, UK.

出版信息

Environ Microbiol Rep. 2025 Aug;17(4):e70148. doi: 10.1111/1758-2229.70148.

Abstract

Environmental contamination by Cr(VI) leaching from chromite ore processing residue (COPR) legacy disposal sites can pose a threat to human health. Under iron-reducing conditions, microbial activity can convert mobile and toxic Cr(VI) to less mobile and less toxic Cr(III); however, COPR waste is a very hostile environment for microbial life. Microcosms using soil from beneath a COPR disposal site were challenged with Cr(VI) with and without acetate to stimulate microbial metabolism. Geochemistry showed that when the microbial populations were reducing iron, Cr(VI) was also reduced, and 16S rRNA gene sequencing showed that the community composition evolved over the course of the experiment. Meta-transcriptome data revealed ~3% of transcripts were differentially regulated (p = 0.01) between the acetate amended and unamended systems, with twice as many transcripts downregulated by acetate. Gene ontology (GO) terms for processes involving the cell wall, cell periphery, plasma membrane and encapsulating structures as well as catabolic processes, especially carbohydrate metabolism, were significantly enriched in the unamended microcosm meta-transcriptome. Transcripts for alternative sigma (σ) factors and anti-σ factors were prominent among the differentially regulated genes. The study provides insight into how the provision of acetate shapes metabolic processes and life history strategies in an alkaline Cr(VI) impacted environment.

摘要

来自铬铁矿加工残渣(COPR)遗留处置场地的六价铬浸出对环境造成的污染会对人类健康构成威胁。在铁还原条件下,微生物活动可将可移动且有毒的六价铬转化为移动性较低且毒性较小的三价铬;然而,COPR废物对微生物生存来说是一个非常恶劣的环境。利用取自一个COPR处置场地下方的土壤构建的微观生态系统,在添加和不添加乙酸盐的情况下用六价铬进行处理,以刺激微生物代谢。地球化学分析表明,当微生物群体在还原铁时,六价铬也会被还原,16S rRNA基因测序显示群落组成在实验过程中发生了演变。元转录组数据显示,在添加乙酸盐和未添加乙酸盐的系统之间,约3%的转录本存在差异调节(p = 0.01),其中因乙酸盐而下调的转录本数量是前者的两倍。在未添加乙酸盐的微观生态系统元转录组中,涉及细胞壁、细胞外周、质膜和包封结构以及分解代谢过程(尤其是碳水化合物代谢)的基因本体(GO)术语显著富集。在差异调节的基因中,替代sigma(σ)因子和抗σ因子的转录本很突出。该研究深入了解了乙酸盐的添加如何塑造在碱性六价铬影响环境中的代谢过程和生命史策略。

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