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.中小亚基核糖体蛋白多个旁系同源物的调控

Regulation of multiple paralogs of a small subunit ribosomal protein in .

作者信息

Schmidt Sierra S, Farah Alexandra R, Macaraeg Aisling, Floyd Daniel, Trautmann Hannah S, Ramsey Kathryn M

机构信息

Department of Cell and Molecular Biology, University of Rhode Island, Kingston, RI 02881, USA.

Department of Microbiology and Immunology, University of Louisville School of Medicine, Louisville, KY 40202, USA.

出版信息

bioRxiv. 2025 Jun 29:2025.06.29.662229. doi: 10.1101/2025.06.29.662229.

DOI:10.1101/2025.06.29.662229
PMID:40667052
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12262407/
Abstract

is a highly infectious human pathogen that must replicate inside macrophage to cause disease. The ribosomes of can incorporate one of three different paralogs for the small ribosomal subunit protein bS21. One of these paralogs positively impacts translation of key virulence genes and promotes intramacrophage replication. Although ribosomal bS21 content influences virulence, the factors that control bS21 paralog production are not well understood. Here, we reveal that all three bS21 proteins influence the transcript abundance of the paralog important for virulence, bS21-2. In contrast, the other bS21 paralogs (bS21-1 and bS21-3) do not affect their own production. We further determined that the leader sequence of the bS21-2 mRNA is sufficient for bS21-mediated repression of mRNA abundance, suggesting that bS21-2 is autogenously regulated. Yet we determined that the increase in bS21-2-encoding mRNA is not reflected by increased protein production, suggesting that translation of this transcript is controlled by other factors. Finally, we found that bS21-2 exerts at least some of its effects on the bS21-2 transcript by decreasing its stability. Together, our findings suggest that integrates multiple signals into a regulatory network to control the appropriate production of each bS21 paralog, and particularly the paralog important for virulence, bS21-2. This regulatory network in turn may control ribosomal heterogeneity and virulence gene expression.

摘要

是一种高度传染性的人类病原体,必须在巨噬细胞内复制才能致病。其核糖体可以将三种不同的旁系同源物之一整合到小核糖体亚基蛋白bS21中。其中一种旁系同源物对关键毒力基因的翻译产生积极影响,并促进巨噬细胞内复制。尽管核糖体bS21含量影响其毒力,但控制bS21旁系同源物产生的因素尚未完全了解。在这里,我们发现所有三种bS21蛋白都会影响对毒力很重要的旁系同源物bS21-2的转录本丰度。相比之下,其他bS21旁系同源物(bS21-1和bS21-3)不影响它们自身的产生。我们进一步确定,bS21-2 mRNA的前导序列足以介导bS21对mRNA丰度的抑制,这表明bS21-2是自我调节的。然而,我们确定编码bS21-2的mRNA增加并没有反映在蛋白质产量的增加上,这表明该转录本的翻译受其他因素控制。最后,我们发现bS21-2通过降低其稳定性对bS21-2转录本产生至少部分影响。总之,我们的研究结果表明,它将多个信号整合到一个调控网络中,以控制每个bS21旁系同源物的适当产生,特别是对毒力很重要的旁系同源物bS21-2。反过来,这个调控网络可能控制核糖体的异质性和毒力基因表达。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/559fa63f63e5/nihpp-2025.06.29.662229v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/57f69eccb20c/nihpp-2025.06.29.662229v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/48a8cf90654f/nihpp-2025.06.29.662229v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/1c53bbd1b39f/nihpp-2025.06.29.662229v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/1df032a56823/nihpp-2025.06.29.662229v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/559fa63f63e5/nihpp-2025.06.29.662229v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/57f69eccb20c/nihpp-2025.06.29.662229v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/48a8cf90654f/nihpp-2025.06.29.662229v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/1c53bbd1b39f/nihpp-2025.06.29.662229v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/1df032a56823/nihpp-2025.06.29.662229v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0955/12262407/559fa63f63e5/nihpp-2025.06.29.662229v1-f0005.jpg

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本文引用的文献

1
Ribosome heterogeneity results in leader sequence-mediated regulation of protein synthesis in .核糖体异质性导致在 中通过前导序列介导的蛋白质合成调控。
J Bacteriol. 2023 Sep 26;205(9):e0014023. doi: 10.1128/jb.00140-23. Epub 2023 Sep 7.
2
Ribosomes lacking bS21 gain function to regulate protein synthesis in Flavobacterium johnsoniae.核糖体缺乏 bS21 获得功能以调节黄色杆菌中的蛋白质合成。
Nucleic Acids Res. 2023 Feb 28;51(4):1927-1942. doi: 10.1093/nar/gkad047.
3
A Ribosomal Protein Homolog Governs Gene Expression and Virulence in a Bacterial Pathogen.
核糖体蛋白同源物调控细菌病原体的基因表达和毒力。
J Bacteriol. 2022 Oct 18;204(10):e0026822. doi: 10.1128/jb.00268-22. Epub 2022 Sep 19.
4
Non-essential ribosomal proteins in bacteria and archaea identified using COGs.利用直系同源基因簇(COGs)鉴定出的细菌和古菌中的非必需核糖体蛋白。
J Bacteriol. 2021 Jun 1;203(11). doi: 10.1128/JB.00058-21. Epub 2021 Mar 22.
5
The Ribosome as a Switchboard for Bacterial Stress Response.核糖体作为细菌应激反应的总机。
Front Microbiol. 2021 Jan 8;11:619038. doi: 10.3389/fmicb.2020.619038. eCollection 2020.
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Structural basis of sequestration of the anti-Shine-Dalgarno sequence in the Bacteroidetes ribosome.拟杆菌门核糖体中反 Shine-Dalgarno 序列隔离的结构基础。
Nucleic Acids Res. 2021 Jan 11;49(1):547-567. doi: 10.1093/nar/gkaa1195.
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The protein translation machinery is expressed for maximal efficiency in Escherichia coli.蛋白质翻译机制在大肠杆菌中表达以达到最高效率。
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YkgM and YkgO maintain translation by replacing their paralogs, zinc-binding ribosomal proteins L31 and L36, with identical activities.YkgM 和 YkgO 通过用具有相同活性的锌结合核糖体蛋白 L31 和 L36 的同源物替换其等位基因来维持翻译。
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J Bacteriol. 2020 Apr 9;202(9). doi: 10.1128/JB.00746-19.
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