阐明LGALS3BP在冠状动脉粥样硬化中的作用:整合生物信息学和机器学习以获得深入见解。
Elucidating the role of LGALS3BP in coronary atherosclerosis: integrating bioinformatics and machine learning for advanced insights.
作者信息
Zhao Suzhen, Zhao Chuanxin, Wang Linlin, Cheng Baoe, Zheng Man, Wang Xiuyun
机构信息
Dongying People's Hospital (Dongying Hospital of Shandong Provincial Hospital Group), Dongying, Shandong, 257091, PR China.
出版信息
J Cardiothorac Surg. 2025 Aug 14;20(1):338. doi: 10.1186/s13019-025-03462-2.
BACKGROUND
Atherosclerosis (AS) is increasingly recognized as a chronic inflammatory disease that significantly impacts vascular health and contributes to cardiovascular disorders. LGALS3BP, a well-studied molecule, plays key roles in various physiological and pathological processes.
METHODS
We identified LGALS3BP as a central focus through integrative analysis of DEGs across multiple datasets (GSE43292 and GSE9820) from the GEO database, combined with immune-related gene sets from the ImmPort database. Advanced analytical techniques, including Lasso regression and SVM-RFE, were used to refine gene selection. GSEA and GSVA revealed significant enrichment in immune-related pathways. The relationship between LGALS3BP expression and immune processes was explored using CIBERSORT and ESTIMATE algorithms, which indicated a positive association between higher LGALS3BP expression and increased immune cell infiltration.
RESULTS
Among the 10 DEGs associated with LGALS3BP, 13 hub genes were identified via LASSO and SVM-RFE analyses. Functional assays highlighted LGALS3BP's involvement in viral defense, cytokine production, and immune cascades. Increased expression of LGALS3BP was positively correlated with activated dendritic cells, NK cells, memory CD4 T cells, naïve CD4 T cells, CD8 T cells, follicular helper T cells, gamma delta T cells, and regulatory T cells (Tregs), while negatively associated with resting mast cells, M0 macrophages, and eosinophils.
CONCLUSIONS
Our research elucidates the complex relationship between LGALS3BP and AS, positioning it as a potential novel biomarker for diagnosis and disease monitoring. These findings lay the groundwork for future studies and suggest that targeting LGALS3BP-related pathways could enhance our understanding of AS.
背景
动脉粥样硬化(AS)日益被认为是一种慢性炎症性疾病,对血管健康有重大影响,并导致心血管疾病。LGALS3BP是一种经过充分研究的分子,在各种生理和病理过程中发挥关键作用。
方法
我们通过对来自GEO数据库的多个数据集(GSE43292和GSE9820)中的差异表达基因(DEGs)进行综合分析,并结合ImmPort数据库中的免疫相关基因集,将LGALS3BP确定为核心研究对象。使用包括套索回归和支持向量机递归特征消除(SVM-RFE)在内的先进分析技术来优化基因选择。基因集富集分析(GSEA)和基因集变异分析(GSVA)显示免疫相关途径有显著富集。使用CIBERSORT和ESTIMATE算法探索LGALS3BP表达与免疫过程之间的关系,结果表明LGALS3BP表达升高与免疫细胞浸润增加呈正相关。
结果
在与LGALS3BP相关的10个DEGs中,通过套索回归和SVM-RFE分析确定了13个核心基因。功能分析突出了LGALS3BP在病毒防御、细胞因子产生和免疫级联反应中的作用。LGALS3BP表达增加与活化的树突状细胞、自然杀伤细胞、记忆性CD4 T细胞、初始CD4 T细胞、CD8 T细胞、滤泡辅助性T细胞、γδ T细胞和调节性T细胞(Tregs)呈正相关,而与静息肥大细胞、M0巨噬细胞和嗜酸性粒细胞呈负相关。
结论
我们的研究阐明了LGALS3BP与AS之间的复杂关系,将其定位为诊断和疾病监测的潜在新型生物标志物。这些发现为未来的研究奠定了基础,并表明针对LGALS3BP相关途径可能会加深我们对AS的理解。
相似文献
J Matern Fetal Neonatal Med. 2025-12
本文引用的文献
Eur Heart J. 2023-7-7
Front Cardiovasc Med. 2023-1-19
Arthritis Rheumatol. 2023-5