Bonduelle Marie, Desrochers-Noiseux Frédérique, Durand Audrey-Anne, Barnabé Simon, Constant Philippe
Institut national de la recherche scientifique, Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.
Université du Québec à Trois-Rivières, Trois-Rivières, Québec, Canada.
Appl Environ Microbiol. 2025 Aug 25:e0089825. doi: 10.1128/aem.00898-25.
Few attempts have been made to examine the diversity and functions that characterize microbial communities compatible with and beneficial to the biotechnologically relevant mushroom . The quest for complementarity is complicated by the variable nature of beneficial traits, impairing the rational assembly of synthetic communities to improve bioprocesses. This study investigated whether the compatibility between and microbial enrichments is lessened in conditions favoring saprophyte metabolism and is enhanced when a combination of recalcitrant and labile carbon is integrated in the enrichment. The microbial diversity of enrichment cultures and substrates colonized by was analyzed through PCR amplicon sequencing, and the proliferation of was assessed by quantitative image analysis. In general, co-inoculation of lignocellulosic substrate with microbial enrichment reduced the growth of . The saprophytic enrichment conditions were more conducive to the development of antagonistic communities inhibiting growth than enrichment cultures integrating labile carbon substrates. Both microbial community analyses and assays led to the identification of a single phylotype affiliated with spp., which displayed neutral interaction with . Recalcitrant and labile carbon degradation functions were not primary factors driving beneficial microbial communities for . Additional functions beyond carbon metabolism are likely to promote beneficial interactions. Directed enrichment cultures, integrating the mushroom in the earliest stage of the procedure, are expected to promote more beneficial interactions than top-down approaches.IMPORTANCELignocellulosic biomass upcycling biotechnologies integrating solid-state fermentation by fungi are aligned with sustainable development perspectives. While the recalcitrance of this biomass imposes a challenge for the implementation of these bioprocesses converting the lignocellulosic feedstock into bioenergy and bioproducts, pretreatment of lignocellulose biomass with fungi is efficient and generates fewer by-products than chemical approaches. Optimization and stabilization of this bioprocess by integrating microbial consortia has received little attention. The significance of our research is to bridge that knowledge gap by examining how interactions between the biotechnologically relevant basidiomycete and microbial communities influence fungal growth in lignocellulosic substrate. Directed enrichment cultures integrating as a selective agent are expected to trigger more beneficial interactions promoting mushroom growth than our top-down approaches, due to a dominance of antagonistic mushroom-bacteria interactions.
很少有人尝试去研究与具有生物技术相关性的蘑菇相容并有益的微生物群落的多样性和功能特征。由于有益性状的性质多变,寻求互补性变得复杂,这妨碍了合成群落的合理组装以改善生物过程。本研究调查了在有利于腐生菌代谢的条件下,[蘑菇名称]与微生物富集物之间的相容性是否会降低,以及当难降解碳和易降解碳结合在富集物中时,相容性是否会增强。通过PCR扩增子测序分析了富集培养物和被[蘑菇名称]定殖的底物的微生物多样性,并通过定量图像分析评估了[蘑菇名称]的增殖情况。一般来说,木质纤维素底物与微生物富集物共同接种会降低[蘑菇名称]的生长。与整合了易降解碳底物的富集培养物相比,腐生富集条件更有利于抑制[蘑菇名称]生长的拮抗群落的发展。微生物群落分析和[蘑菇名称]检测都导致鉴定出一种与[细菌名称]属相关的单一系统型,它与[蘑菇名称]表现出中性相互作用。难降解碳和易降解碳的降解功能不是驱动对[蘑菇名称]有益的微生物群落的主要因素。除碳代谢外的其他功能可能会促进有益相互作用。在该过程的最早阶段就整合蘑菇的定向富集培养物,预计比自上而下的方法能促进更多有益相互作用。
重要性
整合真菌固态发酵的木质纤维素生物质升级循环生物技术符合可持续发展的观点。虽然这种生物质的顽固性给将木质纤维素原料转化为生物能源和生物产品的这些生物过程的实施带来了挑战,但用真菌对木质纤维素生物质进行预处理是有效的,并且比化学方法产生的副产物更少。通过整合微生物群落来优化和稳定这种生物过程很少受到关注。我们研究的意义在于通过研究具有生物技术相关性的担子菌[蘑菇名称]与微生物群落之间的相互作用如何影响木质纤维素底物中真菌的生长来填补这一知识空白。由于拮抗的蘑菇 - 细菌相互作用占主导地位,将[蘑菇名称]作为选择剂的定向富集培养物预计比我们的自上而下方法能引发更多促进蘑菇生长的有益相互作用。