解析长链非编码RNA TRIBAL在肝细胞模型中的作用。

Deciphering the role of the lncRNA TRIBAL in hepatocyte models.

作者信息

Soubeyrand Sébastien, Lau Paulina, McPherson Ruth

机构信息

Atherogenomics Laboratory, University of Ottawa Heart Institute, Ottawa, Canada.

Division of Cardiology, Ruddy Canadian Cardiovascular Genetics Centre, University of Ottawa Heart Institute, Ottawa, Canada.

出版信息

PLoS One. 2025 Sep 2;20(9):e0322975. doi: 10.1371/journal.pone.0322975. eCollection 2025.

Abstract

We recently reported that the long non-coding RNA TRIBAL/TRIB1AL was required to sustain key hepatocyte functions. Here, we identify HepaRG cells as a model for studying TRIBAL and provide additional validation and functional insights. In contrast to HepG2 and HuH-7 cells, differentiated HepaRG cells showed similarities to primary hepatocytes in response to TRIBAL suppression. TRIBAL suppression was associated with reduced HNF4A and MLXIPL abundance in hepatocytes and HepaRG cells. TRIBAL targeting using a panel of cognate antisense oligonucleotides confirmed specificity. A comparison of TRIBAL-suppressed hepatocyte and HepaRG transcriptomics identified extensive functional overlap. Biological ontologies associated with key hepatic metabolic functions were predicted to be inhibited in both models. Comparative analyses with TRIB1-suppressed HepaRG cells, a central metabolic regulator vicinal to TRIBAL, also revealed extensive functional congruence with TRIBAL. Interestingly, TRIBAL transduction failed to restore function in TRIBAL-suppressed cells, which may be linked to structural differences, as supported by contrasting RNAse R sensitivities between the endogenous and transduced forms. In summary, these findings support the use of HepaRG cells as an experimental model to study TRIBAL and underscore its importance in regulating key hepatocyte genes essential for metabolic function.

摘要

我们最近报道,长链非编码RNA TRIBAL/TRIB1AL是维持关键肝细胞功能所必需的。在此,我们将HepaRG细胞鉴定为研究TRIBAL的模型,并提供了额外的验证和功能见解。与HepG2和HuH-7细胞不同,分化的HepaRG细胞在对TRIBAL抑制的反应中表现出与原代肝细胞相似之处。TRIBAL抑制与肝细胞和HepaRG细胞中HNF4A和MLXIPL丰度降低有关。使用一组同源反义寡核苷酸靶向TRIBAL证实了其特异性。对TRIBAL抑制的肝细胞和HepaRG转录组学的比较确定了广泛的功能重叠。预计在这两种模型中,与关键肝脏代谢功能相关的生物学本体均会受到抑制。与TRIB1抑制的HepaRG细胞(TRIBAL附近的一种中央代谢调节因子)的比较分析也揭示了与TRIBAL广泛的功能一致性。有趣的是,TRIBAL转导未能在TRIBAL抑制的细胞中恢复功能,这可能与结构差异有关,内源性和转导形式之间不同的RNA酶R敏感性支持了这一点。总之,这些发现支持将HepaRG细胞用作研究TRIBAL的实验模型,并强调了其在调节对代谢功能至关重要的关键肝细胞基因中的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/38be/12404505/80645e448c1f/pone.0322975.g001.jpg

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