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腺相关病毒-dCas9载体通过阻碍Ube3a-ATS转录使神经元中父本来源的Ube3a去沉默。

AAV-dCas9 vector unsilences paternal Ube3a in neurons by impeding Ube3a-ATS transcription.

作者信息

Wolter Justin M, James Lucas M, Boeshore Samantha L, Mao Hanqian, McCoy Eric S, Ryan Daniel F, Fragola Giulia, Taylor-Blake Bonnie, Stein Jason L, Zylka Mark J

机构信息

UNC Neuroscience Center, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

Department of Cell Biology and Physiology, The University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.

出版信息

Commun Biol. 2025 Sep 2;8(1):1332. doi: 10.1038/s42003-025-08794-2.

DOI:10.1038/s42003-025-08794-2
PMID:40897812
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12405439/
Abstract

Angelman syndrome (AS) is a debilitating neurodevelopmental disorder caused by loss of maternally-inherited UBE3A. In neurons, paternally-inherited UBE3A is silenced in cis by a long non-coding RNA called Ube3a-ATS. Here, we found that Neisseria meningitidis Cas9 with two mutations (D15A and H587A) in the nuclease domains (dNmCas9) can unsilence the dormant paternal Ube3a allele in mouse and human neurons when targeted to Snord115 snoRNA genes located in introns of Ube3a-ATS. Importantly, dNmCas9 disrupted Ube3a-ATS with a non-template bias and in the absence of a chromatin modifying domain, supporting a transcriptional interference mechanism. When packaged into an adeno-associated virus (AAV) vector, dNmCas9 exhibited dose-dependent Ube3a-ATS knock-down and paternal Ube3a unsilencing in vitro and in vivo. This vector also partially rescued the hind limb clasp phenotype when delivered to neonatal AS model mice. Collectively, our study underscores the potential of dCas9-based therapeutics without chromatin repression domains to mediate transcriptional downregulation.

摘要

天使综合征(AS)是一种由母系遗传的UBE3A缺失引起的使人衰弱的神经发育障碍。在神经元中,父系遗传的UBE3A通过一种名为Ube3a-ATS的长链非编码RNA在顺式作用下被沉默。在此,我们发现核酸酶结构域有两个突变(D15A和H587A)的脑膜炎奈瑟菌Cas9(dNmCas9),当靶向位于Ube3a-ATS内含子中的Snord115 snoRNA基因时,可使小鼠和人类神经元中处于休眠状态的父系Ube3a等位基因去沉默。重要的是,dNmCas9以非模板偏向性方式破坏Ube3a-ATS,且在没有染色质修饰结构域的情况下,这支持了一种转录干扰机制。当被包装到腺相关病毒(AAV)载体中时,dNmCas9在体外和体内均表现出剂量依赖性的Ube3a-ATS敲低以及父系Ube3a去沉默。当将该载体递送至新生AS模型小鼠时,还部分挽救了后肢紧握表型。总的来说,我们的研究强调了不含染色质抑制结构域的基于dCas9的疗法介导转录下调的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/ed3f1826dd04/42003_2025_8794_Fig7_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/ed3f1826dd04/42003_2025_8794_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/764bcd7c33c5/42003_2025_8794_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/cfc5da629b51/42003_2025_8794_Fig2_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/2860e1b91dd6/42003_2025_8794_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/9c158e72e4bc/42003_2025_8794_Fig5_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6e1a/12405439/ed3f1826dd04/42003_2025_8794_Fig7_HTML.jpg

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本文引用的文献

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Exploring the Cytoplasmic Retention of CRISPR-Cas9 in Eukaryotic Cells: The Role of Nuclear Localization Signals and Ribosomal Interactions.探索CRISPR-Cas9在真核细胞中的细胞质滞留:核定位信号和核糖体相互作用的作用
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Roles of SNORD115 and SNORD116 ncRNA clusters during neuronal differentiation.SNORD115 和 SNORD116 ncRNA 簇在神经元分化中的作用。
Nat Commun. 2024 Nov 30;15(1):10427. doi: 10.1038/s41467-024-54573-8.
3
AAV vector-derived elements integrate into Cas9-generated double-strand breaks and disrupt gene transcription.
AAV 载体衍生元件整合到 Cas9 产生的双链断裂处,并破坏基因转录。
Mol Ther. 2024 Nov 6;32(11):4122-4137. doi: 10.1016/j.ymthe.2024.09.032. Epub 2024 Oct 4.
4
Epigenetic editing alleviates Angelman syndrome phenotype in mice by unsilencing paternal Ube3a.表观遗传编辑通过使父本Ube3a去沉默来减轻小鼠的天使综合征表型。
Cell Discov. 2024 Sep 17;10(1):97. doi: 10.1038/s41421-024-00727-3.
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Ube3a unsilencer for the potential treatment of Angelman syndrome.UBE3A 去沉默化治疗 Angelman 综合征的潜在方法。
Nat Commun. 2024 Jul 8;15(1):5558. doi: 10.1038/s41467-024-49788-8.
6
Regional and cellular organization of the autism-associated protein UBE3A/E6AP and its antisense transcript in the brain of the developing rhesus monkey.恒河猴大脑中自闭症相关蛋白UBE3A/E6AP及其反义转录本的区域和细胞组织
Front Neuroanat. 2024 May 30;18:1410791. doi: 10.3389/fnana.2024.1410791. eCollection 2024.
7
Elongation roadblocks mediated by dCas9 across human genes modulate transcription and nascent RNA processing.dCas9 介导的延伸障碍可调节人类基因的转录和新生 RNA 加工。
Nat Struct Mol Biol. 2023 Oct;30(10):1536-1548. doi: 10.1038/s41594-023-01090-9. Epub 2023 Oct 2.
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Neuronal DNA double-strand breaks lead to genome structural variations and 3D genome disruption in neurodegeneration.神经元 DNA 双链断裂导致基因组结构变异和神经退行性变中的三维基因组破坏。
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An ASO therapy for Angelman syndrome that targets an evolutionarily conserved region at the start of the transcript.靶向转录起始处的进化保守区域的 Angelman 综合征的 ASO 疗法。
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